Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8408g00014 ATGGTAAAATCTCCACTTCAGAAGATGTCTAACAACCTCAAGTTCAATCCCTTTAAGAAGCATTTGCTAATAATTTTCACGATGATTCTTTCTCTCCCCTTCAATGTTCAATCTCAAGACAGAGAAGAGGAAGAACAGAACCTGCCACAATCCCCTCAAACCCTTCATCCAAGCAAGGGGATCGTGATAGCAGTGCTCGCCACCATGTTTGCCATTACAACTATCTTACTTTTATATGTCAAGTTCTGTCGAGTCAACGGTCGCCAACATCTTACCCGAAACTCAAATCTCCAAAACTTTCAGGGCCGATCTCGATCAAGTTCAAGAGTTTCTGGTATTGACAAAGAAGTGGTTAAAACCCTCCCTTTCTTCACGTTTTCATCCCTGAAGGGGTTCAAAGATGGCCTAGAATGCACTGTTTGTCTCTCCAAATTCGAGGACTCGGAGACTTTAAGACTGCTTCCGAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACATGCCCTCTCTGTAGACGAAGGGTTGAAGCAGGGGACATAAAGAACCTCAACTACTCCCTAAGCTCAAGGTTCCTCCGAGTTCCTTCAAATCTCACGGACACGGAGGATCTAAACCTTGAAATCTTCCTTCAGAGAGAGCCTTCTCATAGAGGGTCATCGAGAAGAGGCTTTAATGACGCGGGGAACTGCAAGAAACAAGAACTGTTTATTGGTGATGGCAGTGGCGGTGGTGGTGGCACAAAGTGGGACACAGATGTTCGTGTGACAAACCTTAAAATAGTTATCTCTGACGTTTTCACGAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACCTGTTGTCGTTGAACAGCGAGATGCTTAATGATGTCAGCAGCAGGAGATTATGTTCGAGTTCTTTGGAATCCACCGAAGACAGCGGAAAGGTTGACGGAACTTGGCGTTTTAAGGAGGAAGAAAAGTGGTTTACGGAAGTGAATCCTGGTGAGAAGAGGTGCATGTCTGAGATTGCCAATGTTCCGAGGTTTGCAGAAATGGGGAAGGAGAATAGGATCGGAGAAAGTGTTTGGTTGCCAATTGCACGAAGAACTATCCAATGGATTGCAAAACAAGAAAGGAATCCGTGTGAATTAGAACCAAAAACTCTACCCTCAAATGTTTGA 1185 0.4481 MVKSPLQKMSNNLKFNPFKKHLLIIFTMILSLPFNVQSQDREEEEQNLPQSPQTLHPSKGIVIAVLATMFAITTILLLYVKFCRVNGRQHLTRNSNLQNFQGRSRSSSRVSGIDKEVVKTLPFFTFSSLKGFKDGLECTVCLSKFEDSETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNYSLSSRFLRVPSNLTDTEDLNLEIFLQREPSHRGSSRRGFNDAGNCKKQELFIGDGSGGGGGTKWDTDVRVTNLKIVISDVFTRSRWSDLNSSDLLSLNSEMLNDVSSRRLCSSSLESTEDSGKVDGTWRFKEEEKWFTEVNPGEKRCMSEIANVPRFAEMGKENRIGESVWLPIARRTIQWIAKQERNPCELEPKTLPSNV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8408g00014 394 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Vium8408g00014 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Vium8408g00014 394 FunFam RING-H2 finger protein ATL43 113 187 - -
Vium8408g00014 394 SMART ring_2 138 179 IPR001841 -
Vium8408g00014 394 CDD RING-H2_EL5-like 137 180 - -
Vium8408g00014 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 380 - -
Vium8408g00014 394 Pfam Ring finger domain 137 180 IPR001841 -
Vium8408g00014 394 SUPERFAMILY RING/U-box 118 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8408g00014 Vium-Chr8408 93438 94795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8408g00014 47 381 C3H Transcription Factor Family AT2G20030 38.843 3.93e-64 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8408g00014 K10664 - gmx:100816668 497.278