Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8408g00003 ATGAGAGTTTCAGCCGAGAAGACGATGTCGTTGGAGACCGAGGCGGGGCGAGAGAGCAAGAAGATAAAGCGCATTCGCGACTCGAGCAAGCACCCAGTGTACCGTGGCGTGCGGATGCGGAACTGGGGGAAGTGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCGACGCCGGAGATGGCGGCGAGAGCGCACGACGTGGCCGCCCTCAGCATCAAGGGCTCCGCCGCCATTCTGAACTTCCCCCACCTGGCGAACTCCCTCCCACGCCCGGCCTCCCTGGCTGCGCGCGACGTCCAGGCAGCGGCGGCGAAGGCGGCCCACATGGAGCCATCCTCCCTCTCGTCCTTGGTGTCGGCAATGGACCTATCCTCTGCCTCAGACGAGTTGACTCAGATAGTTGAACTCCCGTCCCTGGAAAGCACCGATGATGGGTGCGTGGAGTTGGAAAAGGAGTTCGTTTTCGTGGACTCGGTGGACACGTGGATGTATCAGCCACCACCCTTTGATTTTGACGCGGAACGAGACATTGCCTTGGAGGGTCTGGTGTGGAATTACTAG 585 0.6103 MRVSAEKTMSLETEAGRESKKIKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLANSLPRPASLAARDVQAAAAKAAHMEPSSLSSLVSAMDLSSASDELTQIVELPSLESTDDGCVELEKEFVFVDSVDTWMYQPPPFDFDAERDIALEGLVWNY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8408g00003 194 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vium8408g00003 194 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vium8408g00003 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 151 - -
Vium8408g00003 194 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vium8408g00003 194 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vium8408g00003 194 MobiDBLite consensus disorder prediction 1 20 - -
Vium8408g00003 194 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vium8408g00003 194 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Vium8408g00003 194 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vium8408g00003 194 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Vium8408g00003 194 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8408g00003 Vium-Chr8408 48872 50139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8408g00003 4 175 AP2-EREBP Transcription Factor Family AT5G11590 64.921 2.58e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium8408g00003 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8408g00003 K09286 - gmx:100813069 292.737