Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium83g00002 ATGGCGGACGTCGTCACCGAAGCTGGCGTCGTTGCGGATCCCACCCAACTAGATGTCAAACTGTTCAACCGCTGGAGCTTCGAAGACATTCAGGTTAACGATATTTCGCTGGCTGATTATATCGGAGTGGTGTCGTCCAAGCATGCCACTTATGTTCCTCACACATCCGGTAGGTACTCGGTGAAGCGTTTCAGGAAAGCGCAGTGCCCCATTGTGGAGAGGCTTACTAACTCTCTTATGATGCACGGAAGAAACAACGGAAAGAAGCTCTTGGCTGTTAGGATTATCAAGCATGCCATGGAAATCATTCACTTGCTCACTGACCAGAATCCAATTCAAGTCATTGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCTACTAGAATTGGATCTGCTGGAGTGGTGAGGAGACAAGCCGTTGATATCTCACCCCTTCGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCACGGGAAGCTGCTTTTAGAAACATCAAGACAATTGCTGAATGTTTGGCTGATGAACTTATTAATGCCGCAAAAGGTTCATCCAACAGTTACGCCATCAAGAAAAAAGATGAAATTGAAAGAGTTGCCAAGGCTAATCGTTAA 624 0.4631 MADVVTEAGVVADPTQLDVKLFNRWSFEDIQVNDISLADYIGVVSSKHATYVPHTSGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium83g00002 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vium83g00002 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vium83g00002 207 NCBIfam 30S ribosomal protein S7 19 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vium83g00002 207 Gene3D Ribosomal protein S7 domain 2 207 IPR036823 -
Vium83g00002 207 Pfam Ribosomal protein S7p/S5e 62 207 IPR023798 -
Vium83g00002 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Vium83g00002 207 PANTHER RIBOSOMAL PROTEIN S7 17 207 IPR000235 GO:0006412
Vium83g00002 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 207 IPR000235 GO:0006412
Vium83g00002 207 FunFam 40S ribosomal protein S5 4 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium83g00002 Vium-Chr83 6312 9096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium83g00002 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 90.526 1.84e-131 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium83g00002 K02989 - gmx:100305898 375.941