Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium83g00001 ATGGAATCCCAGGTGAAGCATGCGATTGTTGTCAAGGTTATGGGCCGAACTGGGTCCAGAGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTGAAGGGACCAGTGAGAGAAGGAGACATTCTCACCCTTCTCGAGTCTGAGAGAGAAGCAAGGAGATTGCGTTAG 198 0.4949 MESQVKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium83g00001 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium83g00001 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium83g00001 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Vium83g00001 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vium83g00001 65 FunFam 40S ribosomal protein S28 1 65 - -
Vium83g00001 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Vium83g00001 65 Gene3D - 1 65 IPR012340 -
Vium83g00001 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium83g00001 Vium-Chr83 3645 4982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium83g00001 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 6.47e-36 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium83g00001 K02979 - gmx:100306357 103.219