LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8397g00003	ATGGGTAGTAGCTGTCCTTGTTTCGGGCCGAGGAAGAAGGGCAAAGAGAAGAGTGACAAGGGACGGGACGAGCTAAACAAGAATTGCAAATCTGTAAAGAACACCAATGATGTCTCTGAAAGTTCTTCAGGGAATGGACCAGAAGAAAACCCAGTACAGGAGGGCGAAAATTCTCATAAGGCCCGGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAGTTTTAGAGATGAAACCTTTATTGGGCAAGGAGGATTTGGCATTGTTTACAAGGGAATAATTGGGGAAAATCAGGTTGTAGCAGTTAAAAGACTTGATACTACAGGAGTGCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATCCCAACCTTGTTAATATGATTGGTTACTGTGCAGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAGCCACTTGATTGGAATACCAGAATGATTATAGCTTGTGGATCAGCAAAAGGGCTACATTATCTCCACGATGAAGCAAAGCCTTCAGTTATATACAGGGATCTTAAAGCATCCAATATACTATTGGATGAAGATTTCCATCCAAAACTTTCTGATTTCGGGCTTGCAAAATTTGGTCCAACCGGAGATCAATCATATGTTGCCACAAGGGTCATGGGGACACAAGGTTACTGTGCCCCTGAATATGCCACCAGTGGAAAATTAACGAAGAGATCTGACATATACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAAAGCATATGATGATAAGCATGGCCCTGAAAAGCTTCTAGTAGACTGGGCACGTCCAATGCTGAGAGACAAAAGAAGTTTCCAAAGATTGGTAGATCCACGGCTTCAAGGGAAGTACCCAGGATCATGTCTACCGATGGTGATTGAATTGACAGCCATGTGTCTTCGTGAAGAGCCACGTCAACGGCCTAATGCAGGAGATATAGTGGCAGCTCTGGAATTCTTGTCATCCAAGCAATATTCCCCAAAAGTGTCGAACACAGTCAACAACACAACTGAGATGGAGAGTGGAGAGTCCCCAAATGAAACAACAGCCATTTTGCCAAAAGAATCAGTGAGAGAGCGAGCTGTTGCAGAAGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAACAGTCCTAAGGAACCCCACATAGAGTTGTGA	1266	0.4423	MGSSCPCFGPRKKGKEKSDKGRDELNKNCKSVKNTNDVSESSSGNGPEENPVQEGENSHKARIFTFRELATATKSFRDETFIGQGGFGIVYKGIIGENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHPNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMIIACGSAKGLHYLHDEAKPSVIYRDLKASNILLDEDFHPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTKRSDIYSFGVVLLELITGRKAYDDKHGPEKLLVDWARPMLRDKRSFQRLVDPRLQGKYPGSCLPMVIELTAMCLREEPRQRPNAGDIVAALEFLSSKQYSPKVSNTVNNTTEMESGESPNETTAILPKESVRERAVAEAKLWGETWRQRRQSEQNSPKEPHIEL	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8397g00003	421	MobiDBLite	consensus disorder prediction	1	58	-	-
	Vium8397g00003	421	MobiDBLite	consensus disorder prediction	31	52	-	-
	Vium8397g00003	421	MobiDBLite	consensus disorder prediction	359	421	-	-
	Vium8397g00003	421	MobiDBLite	consensus disorder prediction	10	30	-	-
	Vium8397g00003	421	ProSiteProfiles	Protein kinase domain profile.	76	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8397g00003	421	SMART	serkin_6	76	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8397g00003	421	FunFam	probable serine/threonine-protein kinase RLCKVII	48	151	-	-
	Vium8397g00003	421	MobiDBLite	consensus disorder prediction	359	382	-	-
	Vium8397g00003	421	SUPERFAMILY	Protein kinase-like (PK-like)	56	351	IPR011009	-
	Vium8397g00003	421	Gene3D	Phosphorylase Kinase; domain 1	48	151	-	-
	Vium8397g00003	421	Gene3D	Transferase(Phosphotransferase) domain 1	152	375	-	-
	Vium8397g00003	421	ProSitePatterns	Protein kinases ATP-binding region signature.	82	104	IPR017441	GO:0005524
	Vium8397g00003	421	CDD	STKc_IRAK	82	349	-	-
	Vium8397g00003	421	PANTHER	OS07G0668900 PROTEIN	25	360	-	-
	Vium8397g00003	421	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	198	210	IPR008271	GO:0004672\|GO:0006468
	Vium8397g00003	421	FunFam	Serine/threonine-protein kinase PBS1	152	367	-	-
	Vium8397g00003	421	Pfam	Protein kinase domain	77	346	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8397g00003	421	MobiDBLite	consensus disorder prediction	384	421	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8397g00003	Vium-Chr8397	67623	71788	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8397g00003	4	404	Glycoside Hydrolase	AT3G07070	51.683	3.18e-134	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Vium8397g00003		Pkinase	8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8397g00003	K13430		-	gmx:100809298	652.129