Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8397g00001 ATGCTTCACATCTATAAATTGATTTCTTTCATCACAAGTCCTTCATCTGTCCAAAGCCAAAAGGACTTTGGTGTGGCCTCACTCATGGAAGTGTTAAACCCAGTTGGAGGCGATACCTATAGGCTCCCTGTTGGGTACAGGTTCGACCCCACCGATGAAATTCTTGCAGGCTACTACCTCAGGAAGAGGATCATGGCACACCCACTTCCCAATGATCTCATCCAAGACTATGATGTTCACCAGACTGAGCCTTGGGAGCTCCCAGGAGGTGGGAAGTACATGAATTGGCAGAGGTTTTTCTTCTACGATGTGAGGAGCCGTGTGTTGGGAAACCCTGAGAAGAGAGATGCTGGGAAAGGGCAATGGGAAATGGTGGAGAAAGATGAAGAGGTTGGGTTTTCTGACGAACAAGTCATTGCAAAGAAGAGTGTTCTGGTTTTCTGGAAAGCCAAGGGTAGCTCTCTTGCCAAAACAAAATGGGTGATGCATGAGTTTCGTCTTGCCCTAAAGTCAAATCCATCAAAGATGTCAACCTTGGCTGTGTGCCGCATATTCGAGAGGAAAAACTCAAAGAGGGCAAAGAAAGCAAGAGTGTGTGAAGGGGTGAGGTCTAACAGGAGCAATATTGAAGAAGCTAAGGATGTCACAGCCACTGTCATTGATTTCACAGTGGAGTGTGGCACTGAGACTGGTCCTCCTCCTCCTCCTCCTCCTGGGACCCCCTAG 726 0.4793 MLHIYKLISFITSPSSVQSQKDFGVASLMEVLNPVGGDTYRLPVGYRFDPTDEILAGYYLRKRIMAHPLPNDLIQDYDVHQTEPWELPGGGKYMNWQRFFFYDVRSRVLGNPEKRDAGKGQWEMVEKDEEVGFSDEQVIAKKSVLVFWKAKGSSLAKTKWVMHEFRLALKSNPSKMSTLAVCRIFERKNSKRAKKARVCEGVRSNRSNIEEAKDVTATVIDFTVECGTETGPPPPPPPGTP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8397g00001 241 ProSiteProfiles NAC domain profile. 42 187 IPR003441 GO:0003677|GO:0006355
Vium8397g00001 241 Pfam No apical meristem (NAM) protein 43 167 IPR003441 GO:0003677|GO:0006355
Vium8397g00001 241 PANTHER NAC TRANSCRIPTION FACTOR 56 42 203 - -
Vium8397g00001 241 Gene3D NAC domain 51 193 IPR036093 GO:0003677|GO:0006355
Vium8397g00001 241 SUPERFAMILY NAC domain 35 186 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8397g00001 Vium-Chr8397 10809 12288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8397g00001 29 190 NAC Transcription Factor Family AT5G13180 35.542 7.58e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium8397g00001 NAM 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8397g00001 - - vum:124846897 462.996