Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium838g00003 ATGGGTTATTGCAAAGAAGGGTCGTCTTATTATAACGTTCTTGGTGTTAGTTCGGATTCTAGCGTGGAAGAGATAAAGCGTGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGGTGGACAAAGATGCCTTCTTTGCTGGGAGAAGCCAAACACAAATTCCAGCAAATTCAAGAAGCCTATTCGGTGTTGTCGGACAGTAAGAAAAGAACTCTGTATGATGCGGGTTTGCATGATCCTCAAGAGGGAGAGGACGAGGGGTTTTCTGATTTTATGGAAGAAATGTTGTCTCTCATGGCTCAAGCGAGGAGAGAGAAAAAACATTACGATTTGAAAGAGTTGCAGGGGATGTTGATGGAAATTGCTAAAGGATTCGAGTGTCCTTCAATGTACTGTGGGGTGCCCTCTGCGATTGATGAGTCTCGATGCTTAAAGAAGACTCGTTTAGACAAGAGCACGGGGGAGAATAAGGGGTCACATTTTCAAGTACCTGATCTTAACCTCTATTGCAGTTAA 519 0.4374 MGYCKEGSSYYNVLGVSSDSSVEEIKRAYRKLAMQWHPDRWTKMPSLLGEAKHKFQQIQEAYSVLSDSKKRTLYDAGLHDPQEGEDEGFSDFMEEMLSLMAQARREKKHYDLKELQGMLMEIAKGFECPSMYCGVPSAIDESRCLKKTRLDKSTGENKGSHFQVPDLNLYCS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium838g00003 172 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Vium838g00003 172 SMART dnaj_3 8 70 IPR001623 -
Vium838g00003 172 PANTHER PUTATIVE, EXPRESSED-RELATED 5 130 - -
Vium838g00003 172 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Vium838g00003 172 CDD DnaJ 10 67 IPR001623 -
Vium838g00003 172 Pfam DnaJ domain 10 75 IPR001623 -
Vium838g00003 172 Gene3D DnaJ domain 7 116 IPR036869 -
Vium838g00003 172 SUPERFAMILY Chaperone J-domain 8 85 IPR036869 -
Vium838g00003 172 PRINTS DnaJ domain signature 11 29 IPR001623 -
Vium838g00003 172 PRINTS DnaJ domain signature 29 44 IPR001623 -
Vium838g00003 172 PRINTS DnaJ domain signature 70 89 IPR001623 -
Vium838g00003 172 PRINTS DnaJ domain signature 50 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium838g00003 Vium-Chr838 33446 34692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium838g00003 10 76 C2H2 Transcription Factor Family AT1G74250 48.529 6.08e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium838g00003 - - gmx:100306079 282.722