Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium838g00002 ATGACTCTTTCGGATTCTAGCGTGGAAGAGATAAAGCGTGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGGTGGACAAAGATGCCTTCTTTGCTGGGAGAAGCCAAACACAAATTCCAGCAAATTCAAGAAGCCTATTCGGTGTTGTCGGACAGTAAGAAAAGAACTCTGTATGATGCGGGTTTGCATGATCCTCAAGAGGGAGAGGACGAGGGGTTTTCTGATTTTATGGAAGAAATGTTGTCTCTCATGGCTCAAGCGAGGAGAGAGAAAAAACATTACGATTTGAAAGAGTTGCAGGGGATGTTGATGGAAATTGCTAAAGGATTCGAGTGTCCTTCAATGTACTGTGGGGTGCCCTCTGCGATTGATGAGTCTCGATGCTTAAAGAAGACTCGTTTAGACAAGAGCACGGGGGAGAATAAGGGGTCACATTTTCAAGTACCTGATCTTAACCTCTATTGCAGTTAA 477 0.4423 MTLSDSSVEEIKRAYRKLAMQWHPDRWTKMPSLLGEAKHKFQQIQEAYSVLSDSKKRTLYDAGLHDPQEGEDEGFSDFMEEMLSLMAQARREKKHYDLKELQGMLMEIAKGFECPSMYCGVPSAIDESRCLKKTRLDKSTGENKGSHFQVPDLNLYCS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium838g00002 158 ProSiteProfiles dnaJ domain profile. 1 64 IPR001623 -
Vium838g00002 158 ProSitePatterns Nt-dnaJ domain signature. 41 60 IPR018253 -
Vium838g00002 158 CDD DnaJ 5 53 IPR001623 -
Vium838g00002 158 Gene3D DnaJ domain 3 102 IPR036869 -
Vium838g00002 158 SMART dnaj_3 3 56 IPR001623 -
Vium838g00002 158 SUPERFAMILY Chaperone J-domain 6 71 IPR036869 -
Vium838g00002 158 PRINTS DnaJ domain signature 36 56 IPR001623 -
Vium838g00002 158 PRINTS DnaJ domain signature 15 30 IPR001623 -
Vium838g00002 158 PRINTS DnaJ domain signature 56 75 IPR001623 -
Vium838g00002 158 Pfam DnaJ domain 5 61 IPR001623 -
Vium838g00002 158 PANTHER PUTATIVE, EXPRESSED-RELATED 5 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium838g00002 Vium-Chr838 33446 34743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium838g00002 5 62 C2H2 Transcription Factor Family AT1G74250 47.458 6.14e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium838g00002 - - gmx:100306079 264.233