Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8383g00005 ATGGCCCCTCCTCAGTTTGGTGCCTTGAACGGAGAAATCGATGGTGAAAATCTATCGTACGTGTTTGATATATGGGCAACCGATCAATATAGCTGTTTTCCTCTTCAACCTATTTCGGAGAGTAACAGTTGTACCTTAGTTCTCCCCTATTGTGACGGAAGCATAAGGGATAACAAAAGGGTGAAGAGAACGGTGGGAATCCCCGTTGACTGGTTAGGGAATTTGATGAGCAATTCCCACAGTTTCCTCAACACCAACGCCAACAACTGCAATAGGAGTAGGGATAGCATACCAAAGCTTCATTTCAGAGATCACATACGGACTTACACACAAAGATATCTGGCAGCGGAAGCAGAAGAAGAGGCACCAGACGACATAAATAGTTCAGAAAGTGATGGAGCTGAAGAAGACGGTTGTCATGACGGTGTGAGGCTGGTTCAACTTCTAATAGCATGTGCAGAAGCAGTGGCTTGTCGAGACAAATCGCACGCTTCAATATTACTATCAGAACTCAAAGCCAACGCTTTAGTATTCGGATCTTCGTTCCAAAGAGTTGCCTCTTGTTTTGTTCAAGGCCTAATTGAGAGGCTGAATCTGATTCAGCCCACCGGGCCAGTGAGCCCGATGCCACCTATGATGAACATTATGGACACAGCCTCCGAAGAAATGGAGGAAGCATTCAGATTGGTTTACGAGCTGTGTCCACACATCCAGTTCGGACACTTTGTCACTAATTCTATAGTGATGGAAGCCTTTTCGGGTGAGAGTTTTGTCCATGTAGTGGATTTCGGGATGACTCTCGGTTTACGACACGGACACCAATGGAGAGAACTGATGCGGAGCCTCGCCAATGGCGGCAGCGAACGTCTTCGTCGGCTGCGAATCACGGCGGTGGGACTCTGCGACAGACTTCAATCCATCGGCGACGAACTCTCGGTTTATGCAACTAATTTGGGTATCAATTTTGAATTCTCAGTGGTGAAAAAGAATTTGGAAAGTTTGAAACCGGAGGACATAGAAGTGAGGGAAGAAGAAGTTCTTGCGGTGAACAGCATTCTGCAGCTGCACTGCGTGGTGAAGGAAAGCCGAGGGGCTTTGAATTCAGTGCTGCAGATGGTTCATGGGCTTGGGCCGAAAGTGTTGGTGATGGTGGAGCAGGATTCGAGTCATAACGGACCCTTTTTTCTCGGGAGATTTATGGAATCATTGCACTATTATTCTGCCATATTCGACTCGTTGGATGTCATGTTGCCCAAATATGACACTAAGAGAGCGAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATAGTGAGCCGTGAGGGGCCGTTGAGGATGGAGAGACACGAGAGAGTGGATCAGTGGCGGAGGAGGATGAGCAGGGCGGGGTTTCAGGCTGCGCCGATTAAGATGGTGTCTCAGGCGAAGCAATGGCTTCTGAATGGGAAGGTCTGTGAGGGGTACACGGTGGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCCAAGCCTATTGTGGCGGTTTCTTGCTGGAAATGCTGA 1551 0.4803 MAPPQFGALNGEIDGENLSYVFDIWATDQYSCFPLQPISESNSCTLVLPYCDGSIRDNKRVKRTVGIPVDWLGNLMSNSHSFLNTNANNCNRSRDSIPKLHFRDHIRTYTQRYLAAEAEEEAPDDINSSESDGAEEDGCHDGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLIQPTGPVSPMPPMMNIMDTASEEMEEAFRLVYELCPHIQFGHFVTNSIVMEAFSGESFVHVVDFGMTLGLRHGHQWRELMRSLANGGSERLRRLRITAVGLCDRLQSIGDELSVYATNLGINFEFSVVKKNLESLKPEDIEVREEEVLAVNSILQLHCVVKESRGALNSVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIKMVSQAKQWLLNGKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8383g00005 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 121 510 IPR005202 -
Vium8383g00005 516 ProSiteProfiles GRAS family profile. 136 515 IPR005202 -
Vium8383g00005 516 Pfam GRAS domain family 145 515 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8383g00005 Vium-Chr8383 76796 78602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8383g00005 137 516 GRAS Transcription Factor Family AT1G66350 36.761 6.53e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium8383g00005 GRAS 6.3e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8383g00005 - - gmx:100815959 818.535