Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8381g00002 ATGGACCAAGTCCTTCTTGACGACATAATCAATCGCCTTCTCGAAGTTCGTGGCCGACCGGGGAAGCAGGTGCAGCTGTCGGAGTCCGAGATCCGCCAGCTCTGTACCGCTTCCAGAGATATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCGATTAAGATTTGCGGTGATGTACACGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTGAGGCTAACTACTTATTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTAGCTTATAAAATAAAATATCCTGAGAACTTTTTTCTTTTGAGGGGTAACCATGAATGTGCATCTATTAACCGTATATATGGATTTTATGACGAGTGTAAAAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACCGAATGCTTCAATTGCCTGCCTGTGGCAGCACTCATTGATGAAAAGATATTGTGCATGCATGGGGGCCTTTCTCCTGATTTACATAATTTGGATCAAATTAGAAATCTACTACGGCCCACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGATCCAAGCAAAGAGGTTCAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCGGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGGTGGTGGAGGATGGGTATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCGGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTGATGTGCTCTTTCCAAATATTGAAGCCAGCTGATAAAAAAGCAAAGCTCAACAGTACTACCACTACTAAGCCAGGAAACTCCCCAGCAGGTGTAAAGTCTTTCATGGGTACAAGAGTATGA 975 0.4246 MDQVLLDDIINRLLEVRGRPGKQVQLSESEIRQLCTASRDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLLRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNSTTTTKPGNSPAGVKSFMGTRV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8381g00002 324 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vium8381g00002 324 Gene3D - 1 305 IPR029052 -
Vium8381g00002 324 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vium8381g00002 324 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vium8381g00002 324 MobiDBLite consensus disorder prediction 300 324 - -
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vium8381g00002 324 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vium8381g00002 324 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vium8381g00002 324 SUPERFAMILY Metallo-dependent phosphatases 17 300 IPR029052 -
Vium8381g00002 324 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 303 - -
Vium8381g00002 324 CDD MPP_PP1_PPKL 6 294 - -
Vium8381g00002 324 FunFam Serine/threonine-protein phosphatase 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8381g00002 Vium-Chr8381 1801 11840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8381g00002 55 239 Calmodulin-binding Proteins AT5G63870 31.818 8.30e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8381g00002 K06269 - gmx:100799218 648.662