Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium837g00005 ATGATATGTGATGCACTTATAGTATTACTTGGACTTTTGCGCAAGTGGTCAGTGATTGCCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAGTTGAAGCTTCCACCTCAAAACAGCACTCCCTAGTAGAATCAATTCAAGAGGAATCTGGTGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTGCCAAGCTACTTCCCAAACTCCTGACAGTGATTCTCAATCGCCCCAGCACACATCATTGAGAGATGCTTTGTGCATGATATCTGAACTTGAACATGAAGCAGCCAGTAACGGGAATTTGGCTACTGATAACTTTGCTGACTTTATGGAGCAAAACACAGATCCTATCAGTGCATATTCTTGGGAAGAACTTTATGAAATTTCATATTTATGTGAATTTCTCGCTCCTTCGTACTGA 483 0.4037 MICDALIVLLGLLRKWSVIASHLPGRSDNEIKNHWHAHLKKRFQHNSETNEKVEASTSKQHSLVESIQEESGEVVASSFQNSCQATSQTPDSDSQSPQHTSLRDALCMISELEHEAASNGNLATDNFADFMEQNTDPISAYSWEELYEISYLCEFLAPSY 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium837g00005 160 CDD SANT 14 39 IPR001005 -
Vium837g00005 160 MobiDBLite consensus disorder prediction 44 100 - -
Vium837g00005 160 ProSiteProfiles Myb-like domain profile. 10 39 IPR001005 -
Vium837g00005 160 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 113 - -
Vium837g00005 160 Gene3D - 2 69 - -
Vium837g00005 160 MobiDBLite consensus disorder prediction 56 100 - -
Vium837g00005 160 Pfam Myb-like DNA-binding domain 10 38 IPR001005 -
Vium837g00005 160 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 43 IPR017930 -
Vium837g00005 160 SUPERFAMILY Homeodomain-like 13 49 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium837g00005 Vium-Chr837 177925 178678 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium837g00005 4 102 MYB Transcription Factor Family AT3G23250 40.000 2.69e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium837g00005 Myb_DNA-binding 6.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium837g00005 K09422 - gmx:106799185 158.303