Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium837g00004 ATGATGGTGAGAACCCCGAGCAGTGACAAAAATGGAATGAAGAGAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGATTATATTACTAGGTATGGCCACTGGAATTGGCGCCTTCTCCCTCAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTGAATTACCTAAGGCCAAACCTGAAACGAGGAAACTACACTGAGGAAGAAGAAGAAACTATCATCAAGCTGCACCGACATCTCGGAAACAGATGGTCTGCTATTGCTGCACAGATTCCAGGAAGAACAGACAATGAAATAAAAAACTATTGGCACACGAACCTGAAGAAACGATTTGAACAAGACACAGGCACAGAATCTCAAGTTTCAAACTCATGTGAACGATCCCCATCAACAACAAGTGCAGATACTTTCCAAAGCTTTAACTCCACGGAAGATTGTTCCCCATTTTCCCAGCATTCATCATCCTCCACAACAAGCGCAGAATGTAACACTGTAACCATCAACGAAAATCTGGATCTGCAAGATGAATTTTCCTTTTGGGACGCTGACACAGATCTTTCATTCGCAGCTACTCAACCTGAGTTCTTCACTTTTGATGCACAACTTTGGAGCCATGATAACTGA 642 0.4361 MMVRTPSSDKNGMKRGTWTPEEDKKLVDYITRYGHWNWRLLPQFAGLARCGKSCRLRWLNYLRPNLKRGNYTEEEEETIIKLHRHLGNRWSAIAAQIPGRTDNEIKNYWHTNLKKRFEQDTGTESQVSNSCERSPSTTSADTFQSFNSTEDCSPFSQHSSSSTTSAECNTVTINENLDLQDEFSFWDADTDLSFAATQPEFFTFDAQLWSHDN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium837g00004 213 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 174 - -
Vium837g00004 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vium837g00004 213 SMART sant 14 64 IPR001005 -
Vium837g00004 213 SMART sant 67 115 IPR001005 -
Vium837g00004 213 MobiDBLite consensus disorder prediction 122 143 - -
Vium837g00004 213 MobiDBLite consensus disorder prediction 119 143 - -
Vium837g00004 213 Gene3D - 15 67 - -
Vium837g00004 213 Gene3D - 69 140 - -
Vium837g00004 213 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vium837g00004 213 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vium837g00004 213 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vium837g00004 213 CDD SANT 81 113 IPR001005 -
Vium837g00004 213 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium837g00004 213 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vium837g00004 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium837g00004 213 CDD SANT 17 62 IPR001005 -
Vium837g00004 213 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium837g00004 Vium-Chr837 119926 126469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium837g00004 2 120 MYB Transcription Factor Family AT2G31180 68.908 2.33e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium837g00004 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium837g00004 K09422 - gmx:100778518 316.235