Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium837g00003 ATGGTGAGAACTCCGTCTTGTGACAAAAGTGGACTGAGAAAGGGTACTTGGACTCCCGAAGAAGATATGAAGTTAGTTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGATTGAGATGGATGAACTATCTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGAATGCTCAAAACTCTTGGTAACAGATGGTCCGCTATTGCTGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACTCTCAAGAAAAAGTATCAACAAAATACAGCTACAAATGAAGATGCCAGAGCCTCCAAATCAAAGAAAAAAGAATCCAACAAAAATGGTGTTACTGTTAGACTTCCAGCCACTTCCCAGATTTCAGATAATTCATCATTCTCGCCGGTTTCATCCTCCAGCAGCGAGTTTTCCTCCATAACTTCAGATTTTTCCAGTTTTACTAGCATGGAAAATTTGTTGTTTGAAGATGACTTGGGTTTTCTTGATTCGTATGTGAATGAAAGTTTCTGGAAAGAACTGAATCTTGATGGTGAACCTTGTGAAGTAGTGTCAAGAGATACTACTTCTACAGAGATGGTTGATTCTTGTGCATTATCTCCGCATCAATCATTGAGTGAAAGTGTCATTGTGGACAATGACTTTGGCAGCTTTCTGGATGCAAATGGAGGGGTAACATTCGATAACTTTTGGTCACAACCATATGTGGCTGACGTGTCCCACGTTCCAAGCGAGCTATTTGTTCCCTCCGTGGTAGAATCTGAATATTTTACTCCAATCTACGATGATCTGTGGGGTCAAAGTCATTTTGTACAATCAAAGTTTTAG 918 0.4096 MVRTPSCDKSGLRKGTWTPEEDMKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTPQEEECIIRMLKTLGNRWSAIAAELPGRTDNEIKNHWHTTLKKKYQQNTATNEDARASKSKKKESNKNGVTVRLPATSQISDNSSFSPVSSSSSEFSSITSDFSSFTSMENLLFEDDLGFLDSYVNESFWKELNLDGEPCEVVSRDTTSTEMVDSCALSPHQSLSESVIVDNDFGSFLDANGGVTFDNFWSQPYVADVSHVPSELFVPSVVESEYFTPIYDDLWGQSHFVQSKF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium837g00003 305 SMART sant 13 63 IPR001005 -
Vium837g00003 305 SMART sant 66 114 IPR001005 -
Vium837g00003 305 CDD SANT 69 112 IPR001005 -
Vium837g00003 305 CDD SANT 16 61 IPR001005 -
Vium837g00003 305 FunFam MYB-related transcription factor 13 66 - -
Vium837g00003 305 Gene3D - 68 142 - -
Vium837g00003 305 MobiDBLite consensus disorder prediction 115 145 - -
Vium837g00003 305 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium837g00003 305 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium837g00003 305 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium837g00003 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium837g00003 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium837g00003 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Vium837g00003 305 Gene3D - 14 66 - -
Vium837g00003 305 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium837g00003 305 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium837g00003 Vium-Chr837 80667 81959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium837g00003 1 204 MYB Transcription Factor Family AT2G31180 47.549 2.10e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium837g00003 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium837g00003 K09422 - gmx:100777107 432.95