Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8378g00002 ATGGAGGAAGTGAAGGAGAAAAATTGGAGAATGGAAGCGGAAGAGAATCTGCAGAGGTTGCAATCTCTTCTGTTGGGTGCGGAACACGCTCTAGCAAACAAGGACTTCGCCTCCGCTTACGTCCTCGCGCTTCGTCTTCTCGGCTTCCTCGACGTGAAGTCCCACTCTGACGCTGTCGATGAGGCCTTCCTTCAACCGACTCGTCGCGACGCACTCTCCAAGCTCCACACCGCTCGCAGATCCCTCACCCCTCAATCTGATCGGCAAGCTTTTGAGCAAGCAAAGAAATCTCCAGGATACATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCGTGCTCTTGTCAACCAATCTAAAGAAAAAGATGCGTATAAATTGGTTGATCACCCGGGGAAACAGGGCAAAACGGGCAGCAAAGCCTCGAAGCAAATGGTGCAAACGAAGTTATCATCCATGTATGGGAAAAGCAGTTTGTGGACTAGCAACTGTTCCCAGAGTTCTTTGAACATGAAAAAGTACAGTTCTGAGGATTGCAGGATTCTTGGTAGGCCTCAATCTCAAGCCAGCCATACAAAGGGTCCTGGTGTCTCTTCTATCTTTCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCAACCAAACGTGTACACGTGGAAACTAATAATCTCAGAGTTGGATACTTGAAGTCACCTTCAAATAAGGACGAAGTTCACCCTGATGTTTGTGGCAAAGGGTTTATTACTGCTAGAGCAAAACTGGAAATTGAAGAAAAGCAGAAGCGAGGAGCAGGTGGTTCACCCTGTAACTCTGTCTCACCGCAGTGTGATAACAGTCCTGCCAACAGGTTACATGGTGGGAGATCATATAGTATTTCACGACGTGGTTTCCGTAGTAATTTTGTTCCCCCTATAAAATCCAATGGGAATAATGCTGGAAATATGAGTGCACGAAATGCTGGAAAATGTGATGATTCTTTAGATGAATCTACAAGGAAATGTTTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCAGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATCATGGATAAAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTATTGATGAGATGGTAATATATCCTTTGCAACGTCCTGACATATTCATGGGCTGCCGTTCACCTGGGAGGGGTCTTCTTTTGTTTGGTCCACCAGGAACCGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTGAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCTGCTGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCCAGTAGACGTCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACGAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGGCTTTATATTCCCCTACCATCCTCAGAAGCAAGAGCTTGGATTGTACGTAACCTTCTACAGAAAGATGGACTATTCAATCTTTCAAACGAGGAAATGGATATCATATGCATCTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAAACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGAGGAGTAACTCTTCAGGACTTCGAGAACTCCCTCAGAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGGACGTATGATCAATGGAACAAGCAATTCGGAAGCTTATCATTGTAG 1983 0.4463 MEEVKEKNWRMEAEENLQRLQSLLLGAEHALANKDFASAYVLALRLLGFLDVKSHSDAVDEAFLQPTRRDALSKLHTARRSLTPQSDRQAFEQAKKSPGYIFGTTGDIDIEKIRNSKYFRALVNQSKEKDAYKLVDHPGKQGKTGSKASKQMVQTKLSSMYGKSSLWTSNCSQSSLNMKKYSSEDCRILGRPQSQASHTKGPGVSSIFQVEGEERAFGNTFSTKRVHVETNNLRVGYLKSPSNKDEVHPDVCGKGFITARAKLEIEEKQKRGAGGSPCNSVSPQCDNSPANRLHGGRSYSISRRGFRSNFVPPIKSNGNNAGNMSARNAGKCDDSLDESTRKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCIDEMVIYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLQKDGLFNLSNEEMDIICILTEGYSGSDMKNLVKDASMGPLREALKQGIEITKLKKEDMRGVTLQDFENSLREVRPSVSPNELGTYDQWNKQFGSLSL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8378g00002 660 MobiDBLite consensus disorder prediction 275 292 - -
Vium8378g00002 660 Pfam AAA+ lid domain 582 618 IPR041569 -
Vium8378g00002 660 SMART AAA_5 415 551 IPR003593 GO:0016887
Vium8378g00002 660 MobiDBLite consensus disorder prediction 270 292 - -
Vium8378g00002 660 Pfam Vps4 C terminal oligomerisation domain 623 656 IPR015415 -
Vium8378g00002 660 PANTHER AAA DOMAIN-CONTAINING 206 657 - -
Vium8378g00002 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 655 IPR027417 -
Vium8378g00002 660 FunFam Fidgetin-like 1 378 560 - -
Vium8378g00002 660 Pfam ATPase family associated with various cellular activities (AAA) 419 549 IPR003959 GO:0005524|GO:0016887
Vium8378g00002 660 ProSitePatterns AAA-protein family signature. 521 540 IPR003960 GO:0005524|GO:0016887
Vium8378g00002 660 Gene3D - 550 636 - -
Vium8378g00002 660 FunFam Fidgetin like 1 550 636 - -
Vium8378g00002 660 Coils Coil 10 30 - -
Vium8378g00002 660 Gene3D - 378 652 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8378g00002 Vium-Chr8378 6878 17087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8378g00002 356 658 Calmodulin-binding Proteins AT3G56690 31.169 9.05e-40 155