LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8378g00001	ATGGAGGAAGTGAAGGAGAAAAATTGGAGAATGGAAGCGGAAGAGAATCTGCAGAGGTTGCAATCTCTTCTGTTGGGTGCGGAACACGCTCTAGCAAACAAGGACTTCGCCTCCGCTTACGTCCTCGCGCTTCGTCTTCTCGGCTTCCTCGACGTGAAGTCCCACTCTGACGCTGTCGATGAGGCCTTCCTTCAACCGACTCGTCGCGACGCACTCTCCAAGCTCCACACCGCTCGCAGATCCCTCACCCCTCAATCTGATCGGCAAGCTTTTGAGCAAGCAAAGAAATCTCCAGGATACATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCGTGCTCTTGTCAACCAATCTAAAGAAAAAGATGCGTATAAATTGGTTGATCACCCGGGGAAACAGGGCAAAACGGGCAGCAAAGCCTCGAAGCAAATGGTGCAAACGAAGTTATCATCCATGTATGGGAAAAGCAGTTTGTGGACTAGCAACTGTTCCCAGAGTTCTTTGAACATGAAAAAGTACAGTTCTGAGGATTGCAGGATTCTTGGTAGGCCTCAATCTCAAGCCAGCCATACAAAGGGTCCTGGTGTCTCTTCTATCTTTCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCAACCAAACGTGTACACGTGGAAACTAATAATCTCAGAGTTGGATACTTGAAGTCACCTTCAAATAAGGACGAAGTTCACCCTGATGTTTGTGGCAAAGGGTTTATTACTGCTAGAGCAAAACTGGAAATTGAAGAAAAGCAGAAGCGAGGAGCAGGTGGTTCACCCTGTAACTCTGTCTCACCGCAGTGTGATAACAGTCCTGCCAACAGGTTACATGGTGGGAGATCATATAGTATTTCACGACGTGGTTTCCGTAGTAATTTTGTTCCCCCTATAAAATCCAATGGGAATAATGCTGGAAATATGAGTGCANCACGACGTGGTTTCCGTAGTAATTTTGTTCCCCCTATAAAATCCAATGGGAATAATGCTGGAAATATGAGTGCACGAAATGCTGGAAAATGTGATGATTCTTTAGATGAATCTACAAGGAAATGTTTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCAGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATCATGGATAAAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTATTGATGAGATGGTAATATATCCTTTGCAACGTCCTGACATATTCATGGGCTGCCGTTCACCTGGGAGGGGTCTTCTTTTGTTTGGTCCACCAGGAACCGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTGAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCTGCTGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCCAGTAGACGTCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACGAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGGCTTTATATTCCCCTACCATCCTCAGAAGCAAGAGCTTGGATTGTACGTAACCTTCTACAGAAAGATGGACTATTCAATCTTTCAAACGAGGAAATGGATATCATATGCATCTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAAACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGAGGAGTAACTCTTCAGGACTTCGAGAACTCCCTCAGAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGGACGTATGATCAATGGAACAAGCAATTCGGAAGCTTATCATTGTAG	2058	0.4446	MEEVKEKNWRMEAEENLQRLQSLLLGAEHALANKDFASAYVLALRLLGFLDVKSHSDAVDEAFLQPTRRDALSKLHTARRSLTPQSDRQAFEQAKKSPGYIFGTTGDIDIEKIRNSKYFRALVNQSKEKDAYKLVDHPGKQGKTGSKASKQMVQTKLSSMYGKSSLWTSNCSQSSLNMKKYSSEDCRILGRPQSQASHTKGPGVSSIFQVEGEERAFGNTFSTKRVHVETNNLRVGYLKSPSNKDEVHPDVCGKGFITARAKLEIEEKQKRGAGGSPCNSVSPQCDNSPANRLHGGRSYSISRRGFRSNFVPPIKSNGNNAGNMSAXRRGFRSNFVPPIKSNGNNAGNMSARNAGKCDDSLDESTRKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCIDEMVIYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLQKDGLFNLSNEEMDIICILTEGYSGSDMKNLVKDASMGPLREALKQGIEITKLKKEDMRGVTLQDFENSLREVRPSVSPNELGTYDQWNKQFGSLSL	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8378g00001	685	PANTHER	AAA DOMAIN-CONTAINING	220	682	-	-
	Vium8378g00001	685	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	403	680	IPR027417	-
	Vium8378g00001	685	MobiDBLite	consensus disorder prediction	275	295	-	-
	Vium8378g00001	685	FunFam	Fidgetin-like 1	403	585	-	-
	Vium8378g00001	685	MobiDBLite	consensus disorder prediction	337	351	-	-
	Vium8378g00001	685	MobiDBLite	consensus disorder prediction	269	298	-	-
	Vium8378g00001	685	ProSitePatterns	AAA-protein family signature.	546	565	IPR003960	GO:0005524\|GO:0016887
	Vium8378g00001	685	Pfam	AAA+ lid domain	607	643	IPR041569	-
	Vium8378g00001	685	Gene3D	-	575	661	-	-
	Vium8378g00001	685	FunFam	Fidgetin like 1	575	661	-	-
	Vium8378g00001	685	Pfam	ATPase family associated with various cellular activities (AAA)	444	574	IPR003959	GO:0005524\|GO:0016887
	Vium8378g00001	685	MobiDBLite	consensus disorder prediction	310	351	-	-
	Vium8378g00001	685	Gene3D	-	403	677	IPR027417	-
	Vium8378g00001	685	Pfam	Vps4 C terminal oligomerisation domain	648	681	IPR015415	-
	Vium8378g00001	685	MobiDBLite	consensus disorder prediction	312	327	-	-
	Vium8378g00001	685	Coils	Coil	10	30	-	-
	Vium8378g00001	685	SMART	AAA_5	440	576	IPR003593	GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8378g00001	Vium-Chr8378	6878	17087	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8378g00001	381	683	Calmodulin-binding Proteins	AT3G56690	31.169	9.80e-40	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8378g00001	K22766		-	gmx:100776024	1098.96