Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8377g00004 ATGAAGACCAATACTAACATTTCTGGGGAGAGGAAATCGCGTAAGAGGCGCAGTAGTGGAAGTGATTCTTTGGAGAACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGGTCAAGAGAGAATGGGGTGGAAGTGATTCAGAAAGCTCCAGCAAAAGGGTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAGAGAATTTGGGGAAAATGGGTTGCTGAGATTCGTGAACCAATCAATGGCAAGCTTGTGGGTGAAAAAGCAAATAGACTTTGGCTTGGTACTTTCTCCACCGCACTTGAAGCTGCTCTTGCTTATGATGAAGCTGCTAAGGCCATGTATGGCCCTTCTGCGCGTTTGAATTTTCCAGACCCTTCTGTGGAGCCAATACACTCTAACGGATCATCATCATCTAGTGGATGTGATAAAAAATCACCTAGTGGTTCTTCAGAGAATGACGGTGATGTCGAAAGAGCTGAGTCGGAAAGGAACCTTCATCAGCCTAATGAAGAGAAACCAAGATTTTCTGAGGTTGGTGTTTTTGAGGTAACACAAGAGAAACTGGTTCTTTGTGGAGGTTGTGTAGCTGATGACTCGATAGAGGAGTTGAAGGAAATGACAAGTGGCTTTGAACAATGTCAAACAAGTGAGGAATGTAAGGCAATAACTTCGGAGAATATTAAGTCTGAAATACCTGAAGAAAGTGAAGGGATAGAGAGAGAATTGGAGAGGGTTCTGAAAAATTCTGGCATAGGTGAAGAGGATAATCTCTTGCATAATGAGCCTTTGGACATAGCAATGAATACAGGAGCTAACTACTGTAGCTCTTCTGATGCTGCTGAACATGACATTGTGGAGAAGAGTGAAGAAACAAGAGGAGAATCAGTTGAAACTTTGAAACAATGTGAGTTAAGCTGCAGCAACCATTGCCTTGGATGTATGCATAACATGCTGCCAGATAGCAATTCAAAACCACATTCTGAGCACTTTAATAACGACCGATCTGAGGCATCCATAGCAAGAAAACATACCGAGGAAGTAATTTCTGAAATCCTGGGGCTGTGTCACAGCAAGTGCTTGAAGATTAATCATGATCAGTCACCACATGAGCATTATAGAACTGAACATTTTGATGACACGAGAACTAAGCTTAAGTGTTTGGAATGCAAGCTGAGAGCACATTCTATTCATTACAAAACTCAGGCACCCATAGTTGGGGATTCCAATTATCCTTCAATGCAAGGAATTCATATGTTTGGTAGTGGCACTGTTGGACCAATTGAAAGCATGTCCCAAATTGATGCTATGAACAACATCAACACAAGCAGAAATTCCCTACCTGGATTTAGTTCTGGGCACAGTAGGAAGTTGTGTGATCTTTCTCAGCAGCTACACAAACTTGGTGGTTGCCTTCCAGAGCATTGGAATAATATGCAGTTTGCAGACTTGGAAGTGGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAGGAGAAGAAGTTACTTGATGTATGCTTTCCCCAAATAGGATCCTAG 1599 0.4234 MKTNTNISGERKSRKRRSSGSDSLENTLEKWKEYNRQQQLGSRENGVEVIQKAPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPSARLNFPDPSVEPIHSNGSSSSSGCDKKSPSGSSENDGDVERAESERNLHQPNEEKPRFSEVGVFEVTQEKLVLCGGCVADDSIEELKEMTSGFEQCQTSEECKAITSENIKSEIPEESEGIERELERVLKNSGIGEEDNLLHNEPLDIAMNTGANYCSSSDAAEHDIVEKSEETRGESVETLKQCELSCSNHCLGCMHNMLPDSNSKPHSEHFNNDRSEASIARKHTEEVISEILGLCHSKCLKINHDQSPHEHYRTEHFDDTRTKLKCLECKLRAHSIHYKTQAPIVGDSNYPSMQGIHMFGSGTVGPIESMSQIDAMNNINTSRNSLPGFSSGHSRKLCDLSQQLHKLGGCLPEHWNNMQFADLEVGYDYSFLNPDYDFGLLEEKKLLDVCFPQIGS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8377g00004 532 MobiDBLite consensus disorder prediction 1 74 - -
Vium8377g00004 532 MobiDBLite consensus disorder prediction 7 32 - -
Vium8377g00004 532 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Vium8377g00004 532 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Vium8377g00004 532 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Vium8377g00004 532 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Vium8377g00004 532 MobiDBLite consensus disorder prediction 144 163 - -
Vium8377g00004 532 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 310 - -
Vium8377g00004 532 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Vium8377g00004 532 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vium8377g00004 532 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vium8377g00004 532 MobiDBLite consensus disorder prediction 140 193 - -
Vium8377g00004 532 MobiDBLite consensus disorder prediction 164 193 - -
Vium8377g00004 532 FunFam Ethylene-responsive transcription factor 2 74 140 - -
Vium8377g00004 532 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8377g00004 Vium-Chr8377 55318 57662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8377g00004 1 230 AP2-EREBP Transcription Factor Family AT2G40340 43.348 2.22e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium8377g00004 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8377g00004 - - gmx:100500303 801.971