Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8377g00002 ATGACCGTTACACTCTTCATCTTTCTCCTCTTCTTCTTTCGCCCCGTCTTTGCTCTCTCCTCTGACGGCATCGCGCTTCTCACTCTAAAATCGGCGGTGGACACCTTCTCCGCTGCCGCCTTCTCCAACTGGAACGACGCCGACGCCACCCCTTGTCGGTGGTCCGGCATCACGTGCGCCAACATCTCCGGCCAGCTGGAGCCGCGCGTCATCGGCGTCACGATCTCCGGCAGGGGCCTCCGTGGCTACCTCCCGTCGGAACTCGGCACGCTGCTCTACCTCCGTCGCCTCAACCTCCACACCAACGCCCTCCGCGGCGCCATCCCGGCGCAGCTATTCAACGCTACCGCTCTCCACAGCGTCTTCCTCCACGGTAACAACCTCTCGGGCACCCTCCCTCCCTCTGTCTGCACCCTCCCTCGCCTCGAAAACCTCGACCTCTCCGATAACGCCCTCTCCGGCGCAGTGCCCGACACGCTCCGAAATTGTTCCCAGCTCCAGCGGCTAATACTAGCCCGCAACAAATTCTCCGGCGTGATTCCGGCGAGTCCCTGGCCAGAGCTGAAAAACCTTGTCCAGCTCGACCTGTCATCGAACCTTCTGGAAGGTTCGATCCCGGACGAACTCGGGGAGCTTAAAACACTAACTGGAACCTTAAACCTTTCGTTCAATCACTTGTCTGGTAAAATTCCTAAATCTCTTGGGAATTTGCCTGTTACGGTGAGTTTCGATCTCCGGAACAATGATTTGAACGGCGAGATTCCCCAGACTGGGTCGTTTTCGAACCAGGGCCCCACTGCGTTTCTCAACAATCCGAACCTGTGTGGGTTTCCTTTGCAGAAACCATGCACAGGTTCAGCACCCAGCGAATTGGGGCGTGGTCCCAGTTCTCGTGGACCATCGGCGCACCGATCTGCGAAGGGGCTGAGTCCCGGTTTGATTATTTTGATCTCGGTGGCGGATGCGGCCGGGGTGGCCTTGATCGGGCTTGTGGTGGTGTATGTTTATTGGAAGAGGAAGGGCAAGTCCAATGGGTGTAGTTGCACTCTGAAGAGGAAGTTTGGTGGGGAGAACGAGAAAGCTAGTTTGTGTTGTTGGTGTAATGGGATGAAGAGTGATGATTCTGAAGTGGAGGAGGTGGAGAAGGAAGAAGGGGAGGGTGGGAAAGGGGAAGGGGATTTGGTGGCCATTGATAAGGGTTTTAACTTTGAACTTGATGAGTTGTTGAGGGCTTCTGCATATGTGTTGGGGAAGAGTGGGTTAGGGATTGTGTATAAGGTGGTCCTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAAGCCATTGGCAAAGTGAAGCATCCCAACATTGTGAAGTTGAGAGCATATTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGAAGAAATGGTCAACCACCACCGAATTTTTCATGGTCAACCAGACTAAGGATCATCAAAGGAACAGCCAGGGGATTGGCCTATCTCCATGAATGCAGTCCTAGAAAATTTGTTCATGGTGACATCAAACCCTCCAACATCCTCCTTGACGCGGACTTTCAACCACACATTTCTGATTTTGGTCTTAACAGACTGATCAGCATCACAGGCAACAACCCATCCTCTGGTGGCTTTATGGGAGGAGCTCTTTCGTACTTGAAGCCATCACAAACAGAGCGAACTAACAACTACAAAGCTCCAGAAGCTCGAGTTCCCGGTTGCAGACCCACCCAGAAGTGGGATGTATATTCATTTGGAGTTGTATTACTTGAATTGCTAACTGGAAAGTCCCCAGATTCTTCTCTGGCAGCATCAACTTCCATGGAAGTTCCTGATTTGGTGAGGTGGGTCAGGAAAGGGTTTGAACAAGAAAGTCCATTGTCTGAAATGGTCGATCCGTCAATGCTCCATGAAGTGCAAGCCAAGAAAGAAGTACTAGCTGTGTTTCATGTAGCACTACAATGCACTGAGGGAGACCCTGAGATCAGGCCTAGGATGAAAACCGTCTCTGAAAATCTAGAAAGAATTGGATCATAA 2124 0.5217 MTVTLFIFLLFFFRPVFALSSDGIALLTLKSAVDTFSAAAFSNWNDADATPCRWSGITCANISGQLEPRVIGVTISGRGLRGYLPSELGTLLYLRRLNLHTNALRGAIPAQLFNATALHSVFLHGNNLSGTLPPSVCTLPRLENLDLSDNALSGAVPDTLRNCSQLQRLILARNKFSGVIPASPWPELKNLVQLDLSSNLLEGSIPDELGELKTLTGTLNLSFNHLSGKIPKSLGNLPVTVSFDLRNNDLNGEIPQTGSFSNQGPTAFLNNPNLCGFPLQKPCTGSAPSELGRGPSSRGPSAHRSAKGLSPGLIILISVADAAGVALIGLVVVYVYWKRKGKSNGCSCTLKRKFGGENEKASLCCWCNGMKSDDSEVEEVEKEEGEGGKGEGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPPPNFSWSTRLRIIKGTARGLAYLHECSPRKFVHGDIKPSNILLDADFQPHISDFGLNRLISITGNNPSSGGFMGGALSYLKPSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSLAASTSMEVPDLVRWVRKGFEQESPLSEMVDPSMLHEVQAKKEVLAVFHVALQCTEGDPEIRPRMKTVSENLERIGS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8377g00002 707 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Vium8377g00002 707 PRINTS Leucine-rich repeat signature 142 155 - -
Vium8377g00002 707 PRINTS Leucine-rich repeat signature 188 201 - -
Vium8377g00002 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 188 705 IPR046959 -
Vium8377g00002 707 SUPERFAMILY Protein kinase-like (PK-like) 415 702 IPR011009 -
Vium8377g00002 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Vium8377g00002 707 FunFam Leucine-rich repeat receptor-like protein kinase 190 285 - -
Vium8377g00002 707 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
Vium8377g00002 707 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Vium8377g00002 707 SMART LRR_typ_2 91 115 IPR003591 -
Vium8377g00002 707 SMART LRR_typ_2 188 212 IPR003591 -
Vium8377g00002 707 SMART LRR_typ_2 139 162 IPR003591 -
Vium8377g00002 707 Gene3D Phosphorylase Kinase; domain 1 398 485 - -
Vium8377g00002 707 Pfam Protein kinase domain 415 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8377g00002 707 Gene3D Transferase(Phosphotransferase) domain 1 486 707 - -
Vium8377g00002 707 FunFam Os07g0541700 protein 498 572 - -
Vium8377g00002 707 CDD STKc_IRAK 416 705 - -
Vium8377g00002 707 SUPERFAMILY L domain-like 21 280 - -
Vium8377g00002 707 SMART serkin_6 414 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8377g00002 707 ProSiteProfiles Protein kinase domain profile. 410 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8377g00002 707 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Vium8377g00002 707 FunFam Leucine-rich repeat receptor-like protein kinase 19 182 - -
Vium8377g00002 707 Gene3D Ribonuclease Inhibitor 20 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8377g00002 Vium-Chr8377 30219 35386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8377g00002 15 705 Receptor kinase-like Gene Family AT1G67510 68.839 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium8377g00002 Pkinase 2.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8377g00002 - - gmx:100795021 1256.12