Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8377g00001 ATGAAGCAGGTAGTAGGAATGGTAGTTTCCAATAAGATGCAGAAATCTGTTGTGGTGGCAGTGGATAGACTATTCTACCACAAGGTGTATGATCGATATGTCAAGCGTACCTCCAAATTCATGGCTCATGATGAGAACAACCTCTGTAACATTGGTGACAAAGTTCGACTAAATCCTTCTAGGCCATTGAGCAAGCATAAACATTGGGTTGTTGCTGAAATTCTTAAGAAGGCACGGATATATGTTCCACCCTCCACCCCAATGTTTCATAATGTCAGCTCCAGCTCTGAAGCACATGCTTCATAA 306 0.4216 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDKVRLNPSRPLSKHKHWVVAEILKKARIYVPPSTPMFHNVSSSSEAHAS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8377g00001 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 Gene3D - 1 97 IPR012340 -
Vium8377g00001 101 FunFam 30S ribosomal protein S17 1 101 - -
Vium8377g00001 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vium8377g00001 101 SUPERFAMILY Nucleic acid-binding proteins 2 90 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8377g00001 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.620 8.45e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8377g00001 K02961 - gmx:100794499 187.193