Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8375g00001 ATGGCAAGAGAAATAACCATCCTTCGAAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGCCTATCAAACAGCATATACCTCGTATTTGAATACATGGAACATGATCTTGCTGGCCTAGTATCACGTCCTGAGATAGTATTCACCGAATCACAGATAAAATGTTACATGAGGCAACTTTTAAGTGGACTCGAGCATTGTCATATGCGTGGTGTTATGCACAGAGACATCAAAGTATCAAATATCTTATTAAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTACAAGTAACAAAAATCCTTTGACAAGTCGTGTCGTGACTTTGTGGTATCGTCCTCCTGAGCTATTGATGGGATCGACTAGCTATGGAGTGTCAGTAGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAAGGAAGAACTGAGGTTGAACAATTGCACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACCAAACTTCCTCATGCAACCATGTTTAAGCCTCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTGAAAGTGCTATAGACCTACTTGAGACTTTATTATCCATCGATGCAAGCAACCGAGGAACTTCCTCGTCTGCCTTAATGTCTGAGTACTTTAACACTAAGCCATACGCTTGTAACCCATCAAATCTCCCAAGATACCCACCAAGCAAAGAAATGGATGTAAAAGTTCAAGAAGATTCATCCAGGAAAAAAATCGAAGGTAAAGTGAGAGAGGTTGCAACATCAAGAAGACAACCAAGACGAGCCACTAAACTTTTGCATGATCCAAACAATTTTGGTAAATCAAGTTCAAAAGAGAACATGCAAAACACTTCTCAAAATGGGCATAAAGATGATGGTAAAACACATCTTACAAAAGGAAGAGGAGGAGGGATGTACAAAGATCATGCAAAGCCTGCCATGGATACCATGTCTGAGACCTCCCAAATGATGAATGTTGTTAATGGTAATGGATACAGTGTGCCAATACAAGTCTCAGGATCTACGAATGATTATACATGGGTCAAAAGAAGAAAACAAGATGCATCATCAACTCTATCTGATGGATCAAAAAGCAAAATTAGTGCACTAGATACCAACTTTGCCAAAGGAACATATGATTTATCTAACCAAAGGGTTTCCATGGATTTTGATCCTGCTGAATTGGTGAATGCTCAGATGACAATCTCTAGATGA 1305 0.39 MAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPEIVFTESQIKCYMRQLLSGLEHCHMRGVMHRDIKVSNILLNNEGVLKIGDFGLANTISTSNKNPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPESAIDLLETLLSIDASNRGTSSSALMSEYFNTKPYACNPSNLPRYPPSKEMDVKVQEDSSRKKIEGKVREVATSRRQPRRATKLLHDPNNFGKSSSKENMQNTSQNGHKDDGKTHLTKGRGGGMYKDHAKPAMDTMSETSQMMNVVNGNGYSVPIQVSGSTNDYTWVKRRKQDASSTLSDGSKSKISALDTNFAKGTYDLSNQRVSMDFDPAELVNAQMTISR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8375g00001 434 MobiDBLite consensus disorder prediction 299 318 - -
Vium8375g00001 434 SUPERFAMILY Protein kinase-like (PK-like) 2 246 IPR011009 -
Vium8375g00001 434 Gene3D Transferase(Phosphotransferase) domain 1 40 281 - -
Vium8375g00001 434 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8375g00001 434 MobiDBLite consensus disorder prediction 263 336 - -
Vium8375g00001 434 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8375g00001 434 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8375g00001 434 PANTHER CELL DIVISION PROTEIN KINASE 2 245 - -
Vium8375g00001 434 FunFam probable serine/threonine-protein kinase At1g54610 40 280 - -
Vium8375g00001 434 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Vium8375g00001 434 MobiDBLite consensus disorder prediction 319 336 - -
Vium8375g00001 434 MobiDBLite consensus disorder prediction 263 294 - -
Vium8375g00001 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8375g00001 Vium-Chr8375 3242 6257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8375g00001 3 281 Core Cell Cycle Gene Families AT5G10270 47.959 1.58e-94 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium8375g00001 Pkinase 9.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8375g00001 - - vum:124846869 874.004