Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8374g00020 ATGCATGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCATTAGTAGGAATCAAGGATCCTGTACGCCCTGGAGTTAAGGAAGCTGTTCAAATTTGTAAAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATACATACAGCAGAAGCTATAGCCAAAGATTGCGGTATACTTACTGAGGGTGGTGTTGCCATAGAAGGTCCAACGTTTCGTGACCTTTCTTCCGAGGAAATGATGGATACCATACCTAGGATCCAGGTGATGGCACGATCCTTACCGCTTGACAAGTATAACTTGGTAAACAATTTGAAGAGTATGTTTGGTGATGTTGTTGCTGTTACTGGTGATGGATCTAATGATGCTCCAGCACTTCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCAAAAGAAAATGCTGATGTCATTATCCTGGATGATAACTTCACGACTATTCTGAATGTTGTCAAATGGGGACGTTCAGTATACATAAACATCCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAATTTCTTTTCTGCATGTATCACAGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCATTAGCCCTAGCTACTGAACCTCCTAACGATGGTCTTTTGGAAAGACTTCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGACAAANGAAAATGAACCACTCAGATTTTGATACGTGTGCGCATGAAAAAATTCGAATTGCTCTCTATGTCCAAAAGGCAGCTTTACAATTTATCGATGCTGGTAATCGAGTTGAATACAAGCTACCGAGTGAAGTGAGAGAGGCTGGTTTTTGTATTCATCCGGAGGAGATTGCTTCTATTGTTCGTGGCCACGATAACAAGATCTTAAATAATATTGGTGGAGTTGAAGCCATCGCAAGGAAACTGTCAGTTTCAGTGGATGGAGGTGTCAGCGAAGAGAGTATAAATAGCCGACAACAGATTTATGGATTCAATCGTTTTACAGAAAAACCTTCTAGATCGTTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACATTGATCATTCTCATTGTTTGTGCTGTAGTTTCTTTAGGTGTAGGGATAGCCACTGAAGGGTGGCCAAGGGGAACGTATGATGGTGTGGGCATCATACTCAGTATATTCTTAGTAGTCACAGTTACAGCTGTCAGTGATTACAAGCAATACCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCACTAGGGATGGGAAAAGGCAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGAGATCAAGTTCCAGCAGATGGACTTTTTATATCAGGATACTTTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTAAATGAAGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTATTAACGAGGGAGGAGAGGATGAGACCCCGTTGCAGGTTAAGTTAAACGGAGTTGCTACTATCATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTATTGATCATAAGGTTTCTGGTTGAAAAAGCACAAAATGGTGAGTTTGCCAACTGGTCTACGGCTGATGCACTGAAGTTACTAGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTGCCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTGACCACTAACCGAATGGTGGTTACTAAGACATGGATATGTGCAAAAGCAATGCAAATAACCGGTAACGAGAGTGCAGACGAACTGAAAACATCTACACCTGAAGGAGTTCAAAACATCCTTTTACAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGAACACAATATTGGGGACCCCAACAGAATCGGCATTATTGGAATTTGGCTGCCTTTTAGGTGCTGATTTTGATGCCTATGCGCAGCGTAAAATGTACAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCGAGCATTCTGCAAAGGTGCATCAGAAATAATATTAAAGATGTGTAACAAAATTATTGATTGCAATGGGGAAGTAGTTGATCTTCCCGAAGAGCATGCAAATAATGTCTTTCGTATTATAAATGATTTTGCTTCTGAAGCTTTGAGAACTCTTTGTTTGGCCTTCAAAGATATAAACGAAATGCATGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCATTAGTAGGAATCAAGGATCCTGTACGCCCTGGAGTTAAGGAAGCTGTTCAAATTTGTAAAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATACATACAGCAGAAGCTATAGCCAAAGAGTGCGGTATACTTACTGAGGGTGGTGTCGCCATAGAAGGTCCAACGTTTCGTGACCTTTCTTCCGAGGAAATGATGGATACCATACCTAGGATCCAGGTGATGGCACGATCCTTACCGCTAGACAAGTATAACTTGGTAAACAATTTGAAGAGTATGTTTGGTGATGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCAGCACTTCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCAAAAGAAAATGCTGATGTCATTATCCTGGATGATAACTTCACGACTATTCTGAATGTTGTCAAATGGGGACGTTCAGTATACATAAACATCCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAATTTCTTTTCTGCATGTATCACAGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCATTAGCCCTAGCTACTGAACCTCCTAACGATGGTCTTTTGGAAAGACGTCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGACAAAGCATATACCAATTAATTATCCTTGCGATTCTAAATTTTGACGGGGAGAGGCTCCTCGGAATTAGTGGTTCGGATGCAACAGAAGTTCTCAACACTCTGATATTCAACACCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGATATTGAAAAGATAAACGTATTCAGAGGCATGTTCGACAGCTGGATATTTTTGTCGATAATTTTGGCCACTGTGGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGGTACTGAGCGTGTTAATCGGAGCAGTTAGCATTCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATAACAGTAAGCAGCACCATGATGGTTATGAGGCATTGCCATCTGGTCCCCAGCAGGCATAA 3753 0.4159 MHGEANIPDSGYTLIALVGIKDPVRPGVKEAVQICKAAGITIRMVTGDNIHTAEAIAKDCGILTEGGVAIEGPTFRDLSSEEMMDTIPRIQVMARSLPLDKYNLVNNLKSMFGDVVAVTGDGSNDAPALREADIGLAMGIAGTEVAKENADVIILDDNFTTILNVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLERLPVARGANFITKPMWRNIIGQXKMNHSDFDTCAHEKIRIALYVQKAALQFIDAGNRVEYKLPSEVREAGFCIHPEEIASIVRGHDNKILNNIGGVEAIARKLSVSVDGGVSEESINSRQQIYGFNRFTEKPSRSFLMFVWDALQDLTLIILIVCAVVSLGVGIATEGWPRGTYDGVGIILSIFLVVTVTAVSDYKQYLQFRDLDKEKKKIFVQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGLFISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLIIRFLVEKAQNGEFANWSTADALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVTKTWICAKAMQITGNESADELKTSTPEGVQNILLQAIFQNTSAEVVKDKDGKNTILGTPTESALLEFGCLLGADFDAYAQRKMYKILKVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCNKIIDCNGEVVDLPEEHANNVFRIINDFASEALRTLCLAFKDINEMHGEANIPDSGYTLIALVGIKDPVRPGVKEAVQICKAAGITIRMVTGDNIHTAEAIAKECGILTEGGVAIEGPTFRDLSSEEMMDTIPRIQVMARSLPLDKYNLVNNLKSMFGDVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIILDDNFTTILNVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLERRPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGERLLGISGSDATEVLNTLIFNTFVFCQVFNEINSRDIEKINVFRGMFDSWIFLSIILATVAFQVVIVEFLGTFASTVPLNWQFWVLSVLIGAVSIPIAAILKCIPVERDNSKQHHDGYEALPSGPQQA 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8374g00020 1250 PANTHER CATION TRANSPORTING ATPASE 5 260 - -
Vium8374g00020 1250 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 670 876 IPR023299 GO:0000166
Vium8374g00020 1250 Gene3D - 347 547 - -
Vium8374g00020 1250 Pfam haloacid dehalogenase-like hydrolase 15 133 - -
Vium8374g00020 1250 FunFam Calcium-transporting ATPase 674 871 - -
Vium8374g00020 1250 SMART Cation_ATPase_N_a_2 329 401 IPR004014 -
Vium8374g00020 1250 ProSitePatterns E1-E2 ATPases phosphorylation site. 666 672 IPR018303 -
Vium8374g00020 1250 CDD P-type_ATPase_Ca_PMCA-like 353 1100 - -
Vium8374g00020 1250 Pfam E1-E2 ATPase 449 642 - -
Vium8374g00020 1250 Gene3D - 131 263 - -
Vium8374g00020 1250 FunFam Calcium-transporting ATPase 864 1012 - -
Vium8374g00020 1250 FunFam Calcium-transporting ATPase 16 164 - -
Vium8374g00020 1250 NCBIfam calcium-translocating P-type ATPase, PMCA-type 324 1229 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium8374g00020 1250 Pfam Cation transporting ATPase, C-terminus 1052 1225 IPR006068 -
Vium8374g00020 1250 Pfam Cation transporting ATPase, C-terminus 204 259 IPR006068 -
Vium8374g00020 1250 SUPERFAMILY Calcium ATPase, transmembrane domain M 331 1228 IPR023298 -
Vium8374g00020 1250 FunFam Calcium-transporting ATPase 426 547 - -
Vium8374g00020 1250 FunFam Calcium-transporting ATPase 984 1230 - -
Vium8374g00020 1250 Pfam haloacid dehalogenase-like hydrolase 662 981 - -
Vium8374g00020 1250 SUPERFAMILY HAD-like 663 1072 IPR036412 -
Vium8374g00020 1250 Pfam Cation transporter/ATPase, N-terminus 331 396 IPR004014 -
Vium8374g00020 1250 PRINTS H+-transporting ATPase (proton pump) signature 967 983 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 PRINTS H+-transporting ATPase (proton pump) signature 824 842 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 PRINTS H+-transporting ATPase (proton pump) signature 999 1024 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 PRINTS P-type cation-transporting ATPase superfamily signature 991 1003 - -
Vium8374g00020 1250 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Vium8374g00020 1250 PRINTS P-type cation-transporting ATPase superfamily signature 967 986 - -
Vium8374g00020 1250 PRINTS P-type cation-transporting ATPase superfamily signature 886 896 - -
Vium8374g00020 1250 PRINTS P-type cation-transporting ATPase superfamily signature 664 678 - -
Vium8374g00020 1250 PRINTS P-type cation-transporting ATPase superfamily signature 864 875 - -
Vium8374g00020 1250 SFLD Haloacid Dehalogenase 646 1019 - -
Vium8374g00020 1250 NCBIfam HAD-IC family P-type ATPase 760 912 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 NCBIfam HAD-IC family P-type ATPase 416 586 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 NCBIfam HAD-IC family P-type ATPase 605 686 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 NCBIfam HAD-IC family P-type ATPase 938 1054 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 NCBIfam HAD-IC family P-type ATPase 90 206 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8374g00020 1250 Gene3D - 379 1226 - -
Vium8374g00020 1250 Gene3D - 661 1012 IPR023214 -
Vium8374g00020 1250 SUPERFAMILY HAD-like 13 224 IPR036412 -
Vium8374g00020 1250 Gene3D - 12 68 IPR023214 -
Vium8374g00020 1250 SUPERFAMILY Calcium ATPase, transduction domain A 449 545 IPR008250 -
Vium8374g00020 1250 Gene3D - 674 871 IPR023299 GO:0000166
Vium8374g00020 1250 SFLD p-type atpase 646 1019 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8374g00020 Vium-Chr8374 170413 177183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8374g00020 4 259 Primary Pumps ATPases AT3G57330 79.297 1.14e-131 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8374g00020 K01537 - gmx:100783489 1714.12