Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8374g00013 ATGGATCACCGACCGAAATCGAAGGATTCACTCCCTTACTCCACTCTTTTCAATCTCGAGTCTTTGGTGAACTTTCAACTTCCACAACACGATGATGATTTTGATTATTATGGAAATAGTAGTCAGGATGAGAGCAGAGGCAGCCAAGGTGGGGGGATTACAAATCACAGTAATGGGAATGTGCATGGAAGGGAGGCGAGTTTGTTGAAGAAGAGGAGGTGGTCTCTGAACCGTGACAGTGAGGATAGGAGCGGTTTTTATGAGACACACATGACAGAGGAGCGATATCGATCAATGTTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTAAAGGATACAATGAGTAGTCCTGCCCAAAATCAAGCTGCTGTTGCACCTGGGAAAAGCAGCACAGGGTTGAAAGCTCGGAAGTCAGGGAATGAGCGCAGGGGAGGATTACATGCTGTGGAGACTACGTCAGAATGGATGAATGATTCGAGCTCCCAGAAACCAGGAAACTACCGTGATGTAGATTTCACCCCACAATATGGCACTGCTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAAGATTCCTCCAATCTATGATAAGTTGGCTGGAGCTCTAAACCTCCCAAGCTTCTCGGATATCCATGTTGATGATTTTTACTTAAAGGGCACCTTGGATTTGGGTTCATTGGCTGAGATGATGGCAGCTGATAAAAGATTTGGGAATAGAAACCGAGCTGGCATGGGTGAAGCATTACCCCAATATGAATCACTACAGGCACGGCTGAAGGTCATAGGAGCTTCAAATTCTGCTCATAAATTCAGTCTGAAAGTGTCTGATGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCGGGAAGCATAAGGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTGAAAGTTTTAGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAAGTGAAGAAAGATCCTGCCTTGATAGAGAAGGAGGAAACAGAACGATGTGGTAAGATTTGGGTTAATATTGTCAGAAGGGACATACCAAAGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTTATTGATGCCAAGAGAGTCTCAGAGATTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGGCTGCCGGAATGCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAAGAGATGGCAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCAGCAGAAGCTTTGAGGCGCGAACAGGAGCTGCGAGAGGCAAAGAGGCAACAACAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTGCTATCTTCAGAAACTTTACCCACCGCAGAAGAAGATGCAAATGACCAAGATGCAATGATTGATGACTCTGCAGATGCTAAGCCTGAAGACGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTTTAAGCAAAGAAGTTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACAGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACCCCCTCCACCATGCCAGTGGCATCCACAGTTCGGACACCTGAATTATTTAAAGGTGTTCTTAAAGAATATCAGCTAAAGGGTCTGCAGTGGCTTGTAAATTGTTACGAACAGGGTTTAAATGGTATTCTAGCAGATGAAATGGGACTTGGAAAGACTATTCAGGCCATGGCATTCTTGGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCAGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCAGAACTGAAAAGACTTCCGTACTGGGGCGGACTCTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTATACCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGAGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCGACAAGTATAAGATGGAAGACACTTCTAAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAACATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAACAATTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCCGAACATGGAGGTACTCTGAATGAGCACCAGCTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGGTTTCTGAGCTGACTAGAAAAACTGAGGTTACTGTGCACTGTAAGCTCAGTTCTCGGCAACAGGCTTTTTATCAAGCAATTAAGAACAAGATCTCTCTTGCCGAATTGTTTGACAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTCTACTTTGCAGAGATTCCGAATTCCCTTCCACCTCCTCCATTTGGGGAATTGGAGGATATTTATTATTCTGGTAGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTATGAAGAAATTGTACAAAGTTCAGAGATTTTTGGATCAGCTGTTGGTCGTGGTGTCTCCAGAGAATCTTTTCAGAAACATTTTAGTATTTTTAGACCAGAAAACGTTTTTCGATCCGTATTCTCAGAAGACACGTACAGTACAAGTGGAAACCTAGGTTTTATCCATTTGATGGATTTGTCTCCACAAGAGGTGATGTTTCTGGCTACTGCTTCTTTTGTGGAGCGACTATTATTTTCTATTACGAGATGGGAACGTAAATTCATTGATGAAGCTGTAGACTTTCTAACTGAGACCATAGATGATGACCCAGAATGTAGTTACCTTGAGAAAGAAAAGGTCAGAACGGTTACAAGAATGTTATTGGTGCCAACGAGATCCGAGGCTCAGTTTCTGCAGGAAAGATTGCAGACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGATTGTCCCACATGAAGATAGGCTGTTGTCAAACGCCAGGCTTGTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCTCCTATTGGTCTTCACTGCTCAAATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCACGATTAAGAGGTTATTTGTGGGATTTGCACGTACATCTGATTATAATGGACCTAGAAAGCCAGATGCTCCTCACCATTTAATTCAAGAGATAGATTCTGAATTACCTGTTTCTCACCCTGCGCTTCAGTTAACACATAGCATTTTTGGAACTTCTCCACCAATGCGCAATTTTGACCCTTCGAAGTTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTATTAAAACGCTTAAGAGCAGGAAATCATCGTGTACTCTTGTTTGCTCAGATGACCAAAATGTTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCATCCACTATCCAGGATCGTAGAGACATGGTCAGAGACTTTCAGCATAGGAATGATATTTTTGTGTTCTTATTGAGTACAAGAGCTGGTGGGTTAGGTATCAACTTGACGGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGCCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCGAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGATCTGTCGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTAGATGATGCTCAGTTGGAGCAGAAGTTAAAGGAGATCCCTCTCCAGGCAAAGGATAAGCAAAAGAAAAAACAACCTATGAAAGGCATTAGGGTAAATGAAGATGGTGATGCATCACTGGAAGATCTAACAAGCTCTGCAGCTCAGGGTACTTCAGATTATGATTCTGCCGTGGATCCAGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCGGATAAGCCGAGGCCAAAGAATTCTCAAAAGATGAGTGAATTTAGTACTGCATTCATGGACAGCGAATTGGATGATGTCGATCCAGTGGGTCAGAAACCCAAGAGACCGAAAAGGGTAAAGAAGAATGTGAACGTTGAAGATGCTTTTACTGGGACTGCTACCACTGTTCCAGAGCAGAGTCAATTTCCACCTCCACGTGATTTTAGTGCCGGAGGTTCTAAAGCAGAATCAGGGCAAGACAACTAA 4587 0.4234 MDHRPKSKDSLPYSTLFNLESLVNFQLPQHDDDFDYYGNSSQDESRGSQGGGITNHSNGNVHGREASLLKKRRWSLNRDSEDRSGFYETHMTEERYRSMLGEHIQKYKRRLKDTMSSPAQNQAAVAPGKSSTGLKARKSGNERRGGLHAVETTSEWMNDSSSQKPGNYRDVDFTPQYGTADRIMYEPASLDIGDGIIYKIPPIYDKLAGALNLPSFSDIHVDDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEALPQYESLQARLKVIGASNSAHKFSLKVSDADLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEETERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSEICQREVRMKVSRSLKWTRAAGMRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPTAEEDANDQDAMIDDSADAKPEDEEDPEEAELKKEALKAAQEAVFKQRSLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFAEIPNSLPPPPFGELEDIYYSGSHNPISYEMPKLVYEEIVQSSEIFGSAVGRGVSRESFQKHFSIFRPENVFRSVFSEDTYSTSGNLGFIHLMDLSPQEVMFLATASFVERLLFSITRWERKFIDEAVDFLTETIDDDPECSYLEKEKVRTVTRMLLVPTRSEAQFLQERLQTGPSHAPFEALIVPHEDRLLSNARLVHSAYTYIPQSRAPPIGLHCSNRNFYYKMIEELHDPTIKRLFVGFARTSDYNGPRKPDAPHHLIQEIDSELPVSHPALQLTHSIFGTSPPMRNFDPSKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDAQLEQKLKEIPLQAKDKQKKKQPMKGIRVNEDGDASLEDLTSSAAQGTSDYDSAVDPEGSKSSNKKRKAASDKPRPKNSQKMSEFSTAFMDSELDDVDPVGQKPKRPKRVKKNVNVEDAFTGTATTVPEQSQFPPPRDFSAGGSKAESGQDN 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 1390 1528 - -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 1435 1455 - -
Vium8374g00013 1528 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Vium8374g00013 1528 Gene3D - 830 899 IPR027417 -
Vium8374g00013 1528 SMART helicmild6 1236 1319 IPR001650 -
Vium8374g00013 1528 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 1390 1411 - -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 1412 1434 - -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 33 65 - -
Vium8374g00013 1528 SMART ultradead3 588 783 IPR014001 -
Vium8374g00013 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1360 IPR001650 -
Vium8374g00013 1528 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 491 521 - -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 114 128 - -
Vium8374g00013 1528 CDD SF2_C_SNF 1198 1330 - -
Vium8374g00013 1528 Gene3D - 588 829 IPR038718 -
Vium8374g00013 1528 FunFam Putative DNA helicase INO80 564 842 - -
Vium8374g00013 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 491 518 - -
Vium8374g00013 1528 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Vium8374g00013 1528 Gene3D - 1174 1429 IPR027417 -
Vium8374g00013 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 820 IPR027417 -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 40 62 - -
Vium8374g00013 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1393 IPR027417 -
Vium8374g00013 1528 Coils Coil 428 467 - -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 1494 1509 - -
Vium8374g00013 1528 FunFam DNA helicase INO80-like protein 1178 1430 - -
Vium8374g00013 1528 PANTHER HELICASE SRCAP-RELATED 88 524 - -
Vium8374g00013 1528 MobiDBLite consensus disorder prediction 114 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8374g00013 Vium-Chr8374 114246 125160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8374g00013 613 902 RAD5 or RAD16-like Gene Family AT5G43530 28.869 9.05e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium8374g00013 SNF2_N 7.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8374g00013 K11665 - gmx:100780615 2676.74