Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8371g00001 ATGGCTTTCCTCTCGGGAGCCATCCTAACCACAACATTGCTCTTTCTTGTTGCATTCTCACTTCCTAATGTCCATGCTACTGGCAAAAGCACTAACAAATATAACAAGAAAGGTGAACTCAGAAAGCATCGTCCCATTTTTAGGCCTACTGGATGGAAGAAAGCTCTTGCAACTTTCTACGATGGAGACACTAAAACATTTGGTGGAGCTTGTGGGTACGATGATGTGGTTAAGGATGGCTACGGCCTAGACACGATAGCAGTGAGTTCAGTTTTGTTTAAGGATGGTCAGTCATGTGGGTCATGTTACGAGATCAAATGTGTAAATTCTCGTGCGGGATGTAAGGCAGGGAAATCCTCTATTTTTGTGACGGGAACCAACCTTTGCCCTCCAAACTACGATATACCAGGTGATGATGGAGGATGGTGCAACCCACCACGCGAACACTTTGATTTGGCCAAACCTGCATATCTCAAAATTGCAGAGTATAAGGCTGGCATAGTCCCAGTCAATTATCGCAGGGTACCGTGCAAGAAGAAAGGAGGAATTCGGTTCACTATTACTGGGAATCCTTATTTTAATTTGGTATCAGTGTGGAATGTTGGAGGAGCTGGAGACATCACAGAAGTGCAGGTAAAGGGTAACAAGAAAATCAAGCATTGGACAAATTTGAAGCGAAATTGGGGTCAAAAATGGCAAAGTGATGTCATGTTAGTGGGAGAGGCATTGTCTTTCAGAGTAAGAAGCAGTGATCTCAGGTACTCTACCTCTCGCTGGATAGCTCCCAGTAATTGGAAATTTGGTCAGACTTTTGTTGGCAAGAACTTCGCTTAG 834 0.44 MAFLSGAILTTTLLFLVAFSLPNVHATGKSTNKYNKKGELRKHRPIFRPTGWKKALATFYDGDTKTFGGACGYDDVVKDGYGLDTIAVSSVLFKDGQSCGSCYEIKCVNSRAGCKAGKSSIFVTGTNLCPPNYDIPGDDGGWCNPPREHFDLAKPAYLKIAEYKAGIVPVNYRRVPCKKKGGIRFTITGNPYFNLVSVWNVGGAGDITEVQVKGNKKIKHWTNLKRNWGQKWQSDVMLVGEALSFRVRSSDLRYSTSRWIAPSNWKFGQTFVGKNFA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8371g00001 277 SUPERFAMILY Barwin-like endoglucanases 51 200 IPR036908 -
Vium8371g00001 277 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Vium8371g00001 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Vium8371g00001 277 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Vium8371g00001 277 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vium8371g00001 277 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Vium8371g00001 277 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Vium8371g00001 277 SMART dpbb_1 85 172 IPR007112 -
Vium8371g00001 277 Pfam Expansin C-terminal domain 183 262 IPR007117 -
Vium8371g00001 277 SUPERFAMILY PHL pollen allergen 179 272 IPR036749 -
Vium8371g00001 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 182 IPR007112 -
Vium8371g00001 277 CDD DPBB_EXPA_N 51 177 - -
Vium8371g00001 277 Gene3D - 180 276 IPR036749 -
Vium8371g00001 277 Pfam Lytic transglycolase 86 172 IPR009009 -
Vium8371g00001 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 273 IPR007117 -
Vium8371g00001 277 Gene3D - 40 178 IPR036908 -
Vium8371g00001 277 PANTHER EXPANSIN-A15 23 276 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8371g00001 Vium-Chr8371 130 1394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8371g00001 46 276 Expansin Gene Family AT3G55500 62.232 5.96e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8371g00001 - - gmx:100800424 433.335