Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8366g00002 ATGTTACTGGATAAGATTCTTCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCACTGACCAAAGGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGAAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATACTATAGGCCAAAATGCTTCTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAACTCCAAGAGGATGGATTCTAGCATTGGGTAAACCACTAAGAATTGGGGTCCCCGTTATGGACTCATTGAAACAATCCGTAACTGTAATTCAGGACCAAACAGAAAATACCACCACTTTCCAAGGATTTACCATTGATATTTTCAGAGCAACTATGGAGTTGCTTCCCTATCACTTGCCCTACAAATTCTATCCTTTCAATGGCACATTTGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTAAGCATAATTTCATATCGATATCAGTACGCAGATTTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGCTTGGTTATTTATGAAACCTTTTACGAAGACTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGGATTAACCCCTCTAATGAAGTTAGATGTTAATTCTAATTCGGCTCATTTGACTGAACATAGGAGACAAGCTACATAG 843 0.3843 MLLDKILLNNFTGLSGKIHFTDQRLDPSDTFQIINVMGKDYKEIGFWTNGLGFSNTIGQNASFNSSMKELGQVLWPGRPWGTPRGWILALGKPLRIGVPVMDSLKQSVTVIQDQTENTTTFQGFTIDIFRATMELLPYHLPYKFYPFNGTFDNLVKQVYLKNFDAVIDVSIISYRYQYADFTQPYTDPGVVMVVPLKSKVDHRAWLFMKPFTKTMWVLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLGLTPLMKLDVNSNSAHLTEHRRQAT 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8366g00002 280 Gene3D - 2 29 - -
Vium8366g00002 280 Gene3D - 203 275 - -
Vium8366g00002 280 Pfam Bacterial extracellular solute-binding proteins, family 3 118 198 IPR001638 -
Vium8366g00002 280 FunFam Glutamate receptor 89 203 - -
Vium8366g00002 280 Gene3D - 94 202 - -
Vium8366g00002 280 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 258 IPR015683 -
Vium8366g00002 280 Gene3D - 30 50 - -
Vium8366g00002 280 SUPERFAMILY Periplasmic binding protein-like II 116 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8366g00002 Vium-Chr8366 9891 18096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8366g00002 2 260 Ion Channels AT1G42540 36.531 1.15e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8366g00002 - - vum:124846845 579.326