LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8366g00001	ATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTGTAGATAATATTGATCGGCTACGGAATAGCTACATCAGGGTTGGATACAGTTCAGGATCCTTTGTGAGACATTATGTGGAGACAGTGTTGAAGTTCCACCCTGAAAACATGAGGAACTATGGAGAACTTGAAGAATATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGTTGCCTTTCTGGAAGTTCCTGCAGCCAAAATTTTCCTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGAGTTGGATTTGCATTTCCAAGGGGGTCTCCATTGATTCCTCACGTAAACAAAGCACTTCTAGATTTAGTAGAAACCGGCAAGGTAAGTGAATTAGAGAACAAAATGCTTGGATCAGAGGAATGTGAAGACACAAAAGTAAATGGAGAAACTGCAAGTCTTAGCCCAAATAGCTTCTGGGTCCTCTTCATATTGACAGGAGGCACATCAACATTTTCTCTCTTGGTTTATGTTTTCTGTATGAATTATGCAAACAGTGAAGAGAAAACAATCTGGGGATTAACCACAATGATCATTCAACAATGTAACCATGCAAAGAGAAGAATGTCAGGAAAAGTAAGTGATGTTGCAGAAAGCCCTACGACCTCTTCAACCACACATAATTTCGATGCAGTAATTGATGTAAGCATAATTTCATATCGATATCAGTACGCAGATTTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAATGTGGATCATAGAGTTTGGTTATTTATGAAACCTTTTACTAATACTATGTGGTTTTTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGAATTTCGATGCAGTAATTGATGTAAGCATAATTTCATATCGATATCAGTACGCAGATTTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGCTTGGTTATTTATGAAACCTTTTACGAAGACTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGGATTAACCCCTCTAATGAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATAGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTGTAGATAATATTGATCGGCTACGGAATAGCTACATCAGGGTTGGATACAGTTCAGGATCCTTTGTGAGACATTATGTGGAGACAGTGTTGAAGTTCCACCCTGAAAACATGAGGAACTACGGAGAACTTGAAGAGTTTGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGTTGCCTTTCTGGAAGCTCCTGCAGCCAAATTTTTCGTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGAGTTGGATTTGCATTTCCAAGGGGGTCTCCATTGATTCCTCACGTAAACAAAGCACTTCTAGATTTAGTAGAAACCGGCAAGGTAAGTGAATTAGAGAACAAAATGCTTGGATCAGAGGAATGTGAAGACACAAAAGTAAATGGAGAAACTGCAAGTCTTAGCCCAAATAGCTTCTGGGTCCTCTTCATATTGACAGGAGGCACATCAACATTTTCTCTCTTGGTTTATGTTTTCTGTATGAATTATGCAAACAGTGAAGAGAAAACAATCTGGGGATTAACCACAATGATCATTCAACAATGTAACCATGCAAAGAGAAGAATGTCAGGAAAAGTAAGTGATGTTGCAGAAAGCCCTACGACCTCTTCAACCACACATGTTACACCAACTCAAGTTTAA	2112	0.4029	MVVWLFVALIITQTYTANLASMLTAERLEPTVDNIDRLRNSYIRVGYSSGSFVRHYVETVLKFHPENMRNYGELEEYAEAFRRKEIGVAFLEVPAAKIFLAKYCKEFIQAGPLYKVGGVGFAFPRGSPLIPHVNKALLDLVETGKVSELENKMLGSEECEDTKVNGETASLSPNSFWVLFILTGGTSTFSLLVYVFCMNYANSEEKTIWGLTTMIIQQCNHAKRRMSGKVSDVAESPTTSSTTHNFDAVIDVSIISYRYQYADFTQPYTDPGVVMVVPLKSNVDHRVWLFMKPFTNTMWFLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLNFDAVIDVSIISYRYQYADFTQPYTDPGVVMVVPLKSKVDHRAWLFMKPFTKTMWVLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLGLTPLMKLDGDKLHSNLSKIVMVVWLFVALIITQTYTANLASMLTAERLEPTVDNIDRLRNSYIRVGYSSGSFVRHYVETVLKFHPENMRNYGELEEFAEAFRRKEIGVAFLEAPAAKFFVAKYCKEFIQAGPLYKVGGVGFAFPRGSPLIPHVNKALLDLVETGKVSELENKMLGSEECEDTKVNGETASLSPNSFWVLFILTGGTSTFSLLVYVFCMNYANSEEKTIWGLTTMIIQQCNHAKRRMSGKVSDVAESPTTSSTTHVTPTQV	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8366g00001	703	FunFam	Glutamate receptor	381	519	-	-
	Vium8366g00001	703	MobiDBLite	consensus disorder prediction	680	703	-	-
	Vium8366g00001	703	SUPERFAMILY	Periplasmic binding protein-like II	12	155	-	-
	Vium8366g00001	703	Pfam	Ligand-gated ion channel	609	638	IPR001320	GO:0015276\|GO:0016020
	Vium8366g00001	703	Gene3D	-	553	614	-	-
	Vium8366g00001	703	Gene3D	-	102	161	-	-
	Vium8366g00001	703	Pfam	Bacterial extracellular solute-binding proteins, family 3	12	155	IPR001638	-
	Vium8366g00001	703	SMART	GluR_14	227	609	IPR001320	GO:0015276\|GO:0016020
	Vium8366g00001	703	MobiDBLite	consensus disorder prediction	685	703	-	-
	Vium8366g00001	703	Pfam	Bacterial extracellular solute-binding proteins, family 3	340	608	IPR001638	-
	Vium8366g00001	703	Pfam	Ligand-gated ion channel	1	185	IPR001320	GO:0015276\|GO:0016020
	Vium8366g00001	703	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	242	341	IPR015683	-
	Vium8366g00001	703	Gene3D	-	1	74	-	-
	Vium8366g00001	703	Gene3D	-	376	527	-	-
	Vium8366g00001	703	SUPERFAMILY	Periplasmic binding protein-like II	243	304	-	-
	Vium8366g00001	703	Gene3D	-	199	311	-	-
	Vium8366g00001	703	SUPERFAMILY	Periplasmic binding protein-like II	340	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8366g00001	Vium-Chr8366	1598	10311	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8366g00001	340	653	Ion Channels	AT5G11180	35.202	1.44e-57	209

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8366g00001	-		-	vum:124846846	1389.4