Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8362g00003 ATGAGTTCCGATGAGACCTTGCTATTGGAATCGGATCCACGTCCTGTGATTGTTCACCGCCGCGGGAAATCGGGTTCCCGGACCTACCTCTGTGGCCATGGTTCCTTCTCGTCTTCGGTGTTCGAGGCGGCTATTGCTGACATCGGCGATTTGGGTGTGAAGGAGCGAAACAAGGAGGTTTTGTCTAGCGATTGCAGCTTCCAGACTGCGTCGTTTAGTAATAGTAACATCTCTGATAGGTGTGCTGTCGAGTCGAAGTTCCCCTGGCAGTTTCCCTTGGAATGCCCCACGCGCGAGAGGAGGCGCTCGGCATCGTGGGGTGCAATGGAACTGCATGGTGCTGATAACCGGAGTGTTCCCTTTGAGATATCCGGAGCTTCGTCTCATGTGCAGGATAGGTTGAATAGTAAATCGCAGAGGATTAGGCATAGGAGTGTGCAATTTGATGATCCTGCTTTTCAGGAGGATGGTGCCAGGTTGATCTATATTAATGATCCCAGGAAGACCAACGACAAGTATGAGTTCACTGGGAACGAGATCCGAACTAGTAGATACACCTTTGTTACCTTTTTGCCCAAGAATCTTTTCATTCAGTTTCATAGGGTTGCGTATCTGTATTTCCTTGCTATTGCAGCGCTCAATCAACTTCCTCCACTGGCTGTGTTTGGGAGGACTGTGTCTCTTTTTCCTCTGTTGTTTGTGCTTTGTGTCACGGCTATTAAGGATGGCTATGAGGATTGGCGGCGGCACAGGTCAGATCGCAATGAAAACAACCGGGAGTCTCTGGTGCTTCAGTCCGGTGATTTCCGATCGAAGAAGTGGAAAAAAGTACAAGCTGGGGAGGTTGTTAAGATCTTTGCTGATGAGACAATTCCGGCTGATATGGTCTTGTTGGGGACGAGTGATCAAAGTGGGCTTGCCTATATTCAGACCATGAATTTGGATGGAGAGTCAAATTTGAAGACAAGGTATGCTAGGCAGGAAACAGCTTCGGTGGTTACTTCGGAATCTTGTGATGTTTTTGGTGTAATTAGGTGTGAGCAACCGAACCGGAATATTTATGAGTTCACTGCTAACATGGAGTTCAATGGACTTAAGTTTTCCCTTAGCCAGTCAAACATTGTTCTCCGTGGCTGCCAGCTTAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCAGGTCAGGAAACAAAAGCAATGCTGAACAGCGCAGCTTCTCCTTCCAAGAGAAGCAGACTTGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCTGTTTTTCTTTTTATCATGTGTTTGGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTACGCCACAAGAACCAGCTGGATACCTTGCCTTACTACAGAAAAATATACTTCACCAACGGACCCGATAATGGAAAGAAATACAAGTATTATGGGATTCCAATGGAAGCATTTTTCTCCTTCTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACAGGGATATGTATGATGCCAGCTCTGGGTCAAGGTTTCAGTGTAGATCATTAAATATAAACGAAGATTTGGGTCAAATACGCTATATATTTTCGGACAAGACTGGAACACTCACAGAAAACAAAATGGAATTCAAGAGGGCAAGCGTACATGGGAAGAATTATGGGAGCTCCTTGCATGCTGTTGATCATACAGCTGTGGATGTTACTCCTAAACGCAGATGGAAGCTCAAATCTGAACCTGTAGTGGATTCTGAACTGATGATGATGTTACGGGAAAACTCCAATAGAGAAGAAAGAGTTTCTGGTCATGAGTTTTTTCTTACACTGGCTGCTTGTAACACTGTAATCCCTATACTTGGTGATGGTGGATTTTCAAGACATGGAACAAATGAATTAAAAGATGATATTAGATGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACTCTTTTTGAACGTACATCAGGACATATCGTTATTGACGTCAACGGTGAGAAACTCAGATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAATGCGGTAAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGAAAATGGCAGTGAGAGTAACAATAACATACTGCACACAACTCAGAGCCATTTGAACGAGTATTCTTCACAAGGTTTGCGCACTCTTGTGATTGGCTCCAGGGATCTTTCTGATGTTGAACTTGAGGAGTGGCAAAGCTGTTATGAAGAGGCAAGCACTTCGTTGACTGACAGAGCTACTAAACTAAGGCAAACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAGGAGGGAGTACCAGAAGCCATTGAGGCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTTTCCTGCAAACTTCTTAGTGGAGATATGCAGCAGATTATTATAAATGGCACTTCAGAGGTTGAATGTAGAAGTCTTCTGGCTGATGCTAAAGCCAAATATGGTGTGAAATCTTCAAGTGGAGGTCGTCGGAGTTCGAAACACAAAACCAATGCTGGACATGGAGATCTTGATATTCCCAATGGTTTCCCCAAATGGAATCCTGGAAAGGAAGAGGGCACTATTGCTCCATTGGCACTTATAATTGATGGCAACAGTTTGGTTTATATTTTGGAGAAGGAACTAGAGTCAGAGCTTTTTGACCTGGCAACTTCCTGCAAGGTTGTGCTTTGCTGTCGTGTTGCGCCCTTGCAAAAGGCAGGAATTGTTGATTTGATCAAGAGCCGGACAGATGATATGACACTGGCTATAGGTGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCTTCAGATTTTGCAATGGGACAGTTTCAGTTTTTAAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGCTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCGTTGACAGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTGTACCTACTATTATTGTTGGTATTCAAGATAAGGACTTGAGTCATAGGACACTCTTGCAGTATCCTAAGCTGTATGGTTCAGGTCACAGGCAAGAAGCGTACAATATGCAACTATTTTGGATCACTATGATTGATACAGTATGGCAGAGCCTTGTTCTTTTCTACATCCCATTGTTCACCTATAAGGACAGTTCAATTGACATATGGAGCATGGGCAGTTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGTGCACCTTGGTATGGACATTAACCGTTGGGTATTAATTACTCATGTTGCGATCTGGGGTTCGATTATCATTACGTATGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTATTTATCATTTGGCAAGGTCCCCTACATATTGGATAACAATTTTACTTATAATTATTGTGGCATTGCTCCCTCGCTTTATTTGTAAAGTTGTCTATCAAATTTTTTGGCCTTCGGACATCCAGATAGCTAGAGAAGCTGATTTAATGAGAAAACGACATGCTACTTTGCGGCCAAGGCTCCAAGTTTCCAGTTAA 3870 0.43 MSSDETLLLESDPRPVIVHRRGKSGSRTYLCGHGSFSSSVFEAAIADIGDLGVKERNKEVLSSDCSFQTASFSNSNISDRCAVESKFPWQFPLECPTRERRRSASWGAMELHGADNRSVPFEISGASSHVQDRLNSKSQRIRHRSVQFDDPAFQEDGARLIYINDPRKTNDKYEFTGNEIRTSRYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSKKWKKVQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASVVTSESCDVFGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLESYMNRETLWLSVFLFIMCLVVAIGMCLWLVRHKNQLDTLPYYRKIYFTNGPDNGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDASSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFKRASVHGKNYGSSLHAVDHTAVDVTPKRRWKLKSEPVVDSELMMMLRENSNREERVSGHEFFLTLAACNTVIPILGDGGFSRHGTNELKDDIRCIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILENGSESNNNILHTTQSHLNEYSSQGLRTLVIGSRDLSDVELEEWQSCYEEASTSLTDRATKLRQTAALIESNLKLLGATGIEDKLQEGVPEAIEALRQAGIKVWVLTGDKQETAISIGLSCKLLSGDMQQIIINGTSEVECRSLLADAKAKYGVKSSSGGRRSSKHKTNAGHGDLDIPNGFPKWNPGKEEGTIAPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIIVGIQDKDLSHRTLLQYPKLYGSGHRQEAYNMQLFWITMIDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLGMDINRWVLITHVAIWGSIIITYGCMVILDSIPVFPNYWTIYHLARSPTYWITILLIIIVALLPRFICKVVYQIFWPSDIQIAREADLMRKRHATLRPRLQVSS 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8362g00003 1289 CDD P-type_ATPase_APLT_Dnf-like 177 1155 - -
Vium8362g00003 1289 SUPERFAMILY Calcium ATPase, transduction domain A 258 400 IPR008250 -
Vium8362g00003 1289 MobiDBLite consensus disorder prediction 895 919 - -
Vium8362g00003 1289 Gene3D - 812 1035 IPR023214 -
Vium8362g00003 1289 SFLD p-type atpase 532 1046 IPR044492 -
Vium8362g00003 1289 Pfam Phospholipid-translocating ATPase N-terminal 161 226 IPR032631 -
Vium8362g00003 1289 Pfam E1-E2 ATPase 259 506 - -
Vium8362g00003 1289 Pfam Cation transport ATPase (P-type) 663 737 - -
Vium8362g00003 1289 Gene3D - 545 557 IPR023214 -
Vium8362g00003 1289 Pfam Phospholipid-translocating P-type ATPase C-terminal 1023 1263 IPR032630 -
Vium8362g00003 1289 SFLD C1.7: P-type atpase like 532 1046 - -
Vium8362g00003 1289 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 147 1272 - -
Vium8362g00003 1289 Gene3D - 558 574 IPR023299 GO:0000166
Vium8362g00003 1289 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 554 829 IPR023299 GO:0000166
Vium8362g00003 1289 FunFam Phospholipid-transporting ATPase IC 545 557 - -
Vium8362g00003 1289 NCBIfam phospholipid-translocating P-type ATPase 175 1270 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium8362g00003 1289 ProSitePatterns E1-E2 ATPases phosphorylation site. 550 556 IPR018303 -
Vium8362g00003 1289 Gene3D - 531 544 - -
Vium8362g00003 1289 SUPERFAMILY Calcium ATPase, transmembrane domain M 175 1262 IPR023298 -
Vium8362g00003 1289 PRINTS P-type cation-transporting ATPase superfamily signature 995 1014 - -
Vium8362g00003 1289 PRINTS P-type cation-transporting ATPase superfamily signature 548 562 - -
Vium8362g00003 1289 Gene3D - 234 404 - -
Vium8362g00003 1289 SUPERFAMILY HAD-like 535 1039 IPR036412 -
Vium8362g00003 1289 Gene3D - 653 797 IPR023299 GO:0000166
Vium8362g00003 1289 FunFam Phospholipid-transporting ATPase 658 793 - -
Vium8362g00003 1289 FunFam Phospholipid-transporting ATPase 812 1035 - -
Vium8362g00003 1289 NCBIfam HAD-IC family P-type ATPase 481 573 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8362g00003 1289 NCBIfam HAD-IC family P-type ATPase 965 1081 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8362g00003 1289 NCBIfam HAD-IC family P-type ATPase 807 864 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8362g00003 Vium-Chr8362 6362 14219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8362g00003 138 1272 Primary Pumps ATPases AT5G04930 56.658 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8362g00003 K14802 - gmx:100789830 2291.15