Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium834g00014 ATGGTGCAATTTTTTAACGTTCCTGAAAACCTTATTTCCTGTCTATGCCTAATGTTGCTGTCGTCGTCGTTGTTAATCCCACGTGCGGGCTGCTCCGGCACGGGTATACGCGAAACGGGTCTCACGTGCGGGGATTATGAGAACCCTGAGTCTTCCGCGTCCAACTTCATGGCCATAATGGACATGGTGTCGTTTCAGGTTAAAGAGAGAGGGTGGGGAGCGCAGACGCTGCTGGGTTCAGGGCCTCCCATGTACGCATTGGCCCAATGCCGGCGCGACCTGAGGCCAGCAGACTGCTACATGTGTTTCAGCCAAGCGAGGCTGGTGTTGTCACGGTGCGTGCCCAAGGCAGCTGGCAGAATCTACCTCGACGGCTGCTTCGTCCGATACGATGACTACTCCTTTATCCGTGAGAGCGTGGACCCCACTCATGACATCGGCATCTGCGTGAGCCCAACTGTGGGGAATGACACGGCCAGACGGGTGACGGCGACGGTGTCGAACGTGACGGAGGAGGCAGCGGAACGTGGGTTCTCGGTGGACGGAGGGGATGGGGTTTTCGCCCTGGCGCAGTGCTGGTCGACGCTGAACAAAGGGAGGTGCAAGATATGCTTGACCGAAGCGGCGAAGAAAGTGCAGGAATGTGTGCCGAGTGGTGAGGGTAAGAGTTTATTCACTGGTTGCATTTTGAGGTATTCAAGGCACAAATTCTACAACGACGTTTCACCACCTAACATCAAGGATTCTACTTCTACTTCTACAGTTTCAGAAAGGCCTGGTGTCTGGACGATCGTTGCATTTGTATTATCGGTGATCGTAGGGATTTCACTCATCGTCCTTGCTGCATTTATGTGCTGTCATAGAATGTCGTCACGTAGAAAAGTAAGCGACAGTGGTGGTTTGGCACCAGATTTTGCCTTCGTAGCAGGCTTCAGTTTTATGTATGATTTGCTCGAGAACGCCACAGATAATTTTGATCCCGCAAACAAATTAGGCCAAGGTGGAGCTGCTTCCGTGTTCAAAGGAACCCTCCCCACTGGGAAGACTGTTGCTGTTAAACGATTATCTTTTAATAAACGGCAATGGACAGAGGGGTTCTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAGAATGTGGTGAAGCTTTTGGGGTGCAGCATCGAAGGCCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAAGTCCTTTTCGGTAAGGGCTCAGCAGATGCTCTGAACTGGGAAAAACGGTTTCAAATCATATGTGGGATAGCTGAGGGCCTAGCATACCTTCATGAAGGTTCTGGAACAAAGATTATTCACAGAGACATAAAGTCCAGCAACATTCTATTTGATGAGAATATGAATCCAAAAATAGCGAATTTTGGTCTTGCTCGCATTGTTACTGGAAACAAATCTCATCTTAGGACAGGAAATTCGAAGACACTGGGATATACGGCTCCTGAATATGTTTCCAATGGACAATTGACAGAGAAGGCAGACATCTATGCTTTTGGTGTCCTAATTGTTGAGATTGTGTGTGGTAAGAAGAACAGTGATCAAATACCGGGGTCAACTTCACTTCTCCACAGCGTGTGGAAGAATTACAAGGCAAATAATATAACAGCATCCGTTGATCCACTTCTGCAAGGTAAACTTACGGTAGACGAAGCATCAAATACGCTCCAAGCTGGCCTTCTTTGTACACAATCAACTGTTACTCTCAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGACTACGCTATTCCCTCTCCAAAGCAACAACCATTCTTCAATTTCAGTGGGCTAAGTCAAAATGACTGCACTGTATCCTCAATTGGGCTTGCAAGTGCAAGGTCCTCCTTTCACAGCACCACCAGTTCACTAATTCCAAATGATGATTTAACAGTACAAGGGAATTCCTTTCCTCATTCTGACAAGTTCATTGCTGGCAGCCCTGATTCAAATTTCCAATTAAATATGGGAGCGCCTGAGCCCAGGTAG 2037 0.4767 MVQFFNVPENLISCLCLMLLSSSLLIPRAGCSGTGIRETGLTCGDYENPESSASNFMAIMDMVSFQVKERGWGAQTLLGSGPPMYALAQCRRDLRPADCYMCFSQARLVLSRCVPKAAGRIYLDGCFVRYDDYSFIRESVDPTHDIGICVSPTVGNDTARRVTATVSNVTEEAAERGFSVDGGDGVFALAQCWSTLNKGRCKICLTEAAKKVQECVPSGEGKSLFTGCILRYSRHKFYNDVSPPNIKDSTSTSTVSERPGVWTIVAFVLSVIVGISLIVLAAFMCCHRMSSRRKVSDSGGLAPDFAFVAGFSFMYDLLENATDNFDPANKLGQGGAASVFKGTLPTGKTVAVKRLSFNKRQWTEGFFNEVNLISGIQHKNVVKLLGCSIEGPESLLVYEFVPNGSLDQVLFGKGSADALNWEKRFQIICGIAEGLAYLHEGSGTKIIHRDIKSSNILFDENMNPKIANFGLARIVTGNKSHLRTGNSKTLGYTAPEYVSNGQLTEKADIYAFGVLIVEIVCGKKNSDQIPGSTSLLHSVWKNYKANNITASVDPLLQGKLTVDEASNTLQAGLLCTQSTVTLRPSMSEVVQMLTKKDYAIPSPKQQPFFNFSGLSQNDCTVSSIGLASARSSFHSTTSSLIPNDDLTVQGNSFPHSDKFIAGSPDSNFQLNMGAPEPR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium834g00014 678 ProSiteProfiles Gnk2-homologous domain profile. 140 237 IPR002902 -
Vium834g00014 678 CDD STKc_IRAK 331 595 - -
Vium834g00014 678 FunFam Cysteine-rich receptor-like protein kinase 2 401 601 - -
Vium834g00014 678 SUPERFAMILY Protein kinase-like (PK-like) 309 596 IPR011009 -
Vium834g00014 678 SMART serkin_6 325 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium834g00014 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Vium834g00014 678 ProSiteProfiles Gnk2-homologous domain profile. 34 135 IPR002902 -
Vium834g00014 678 Pfam Protein kinase domain 328 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium834g00014 678 FunFam Cysteine-rich receptor-like protein kinase 2 293 400 - -
Vium834g00014 678 Gene3D Transferase(Phosphotransferase) domain 1 401 605 - -
Vium834g00014 678 Gene3D - 152 237 IPR038408 -
Vium834g00014 678 Gene3D - 38 135 IPR038408 -
Vium834g00014 678 ProSiteProfiles Protein kinase domain profile. 325 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium834g00014 678 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 617 - -
Vium834g00014 678 Gene3D Phosphorylase Kinase; domain 1 303 400 - -
Vium834g00014 678 Pfam Salt stress response/antifungal 166 234 IPR002902 -
Vium834g00014 678 Pfam Salt stress response/antifungal 75 133 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium834g00014 Vium-Chr834 107732 113916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium834g00014 12 610 Receptor kinase-like Gene Family AT1G70520 41.613 6.74e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium834g00014 Pkinase 5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium834g00014 - - var:108339307 1083.55