Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium834g00006 ATGGACATTCAAGGTAACCTCACAGAAAACCAGGCCTCGCAGCCAATGCATGTGCAAGAAAACTGCCTGAAACCCAGCATGGGGGATCAGCTTCCTTTTGGAGTTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCATCATATTGATCACTTTCCTGTGAATGATGGCTCCTCATCCAATCCTATTTTCTTGCAACATACTCCAAATTTTGATCCCTTTGATCACAATTGCAAGCCTTTTGCTGAGAGCAATGGTAGTGCACATGTTCATCTGATGCACAATTTCCAATATGTAGGTTATAGTTTGAACCTCCCTCGGACGAATCAACTGGATATGGTGGTGGCAAACCAGAGATTCCTGCCCTTCAGTGCTCTAGAAACGAAACCTTTGAATTTTGTTGCACCAGATGAAATCTCATGCATATCCCCACCTAATTTTTATAAGAAAGTTGGTTTGAATAAAAACCTTAGGGAATCCTCTAGCACTAGGAGAACATTCAAAGCTCGGAAGAAATCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAGTGGTCACACATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATGTGGACTGAAGAAGAGGATAAAATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAAGTTGCCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAGAGAAAATGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACCTAGACCAAAATCCACCCATGGACTATCGAAAAAAATCTGTTAAAAATGCCAATGCAAAGACAAACAATAACGGCAAAGCAGCAGCTGAGCTCCTGTGTGGTGATCAATTCTGTTCCAATGGGCAGTTGGTGACAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGTAGCATTGATTCTCTGCTAGATGATATACAAAGTGCTTCTACTATGGATGACAAAGATTTTGATGGAAAAGTACAATGTGCTCCTACTGTGGAGGGAAAACAATCTCATCATCATCACACTGAGATAACTATGGGGATTGAAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCACATCACGTTAATGAAAAGTAG 1296 0.4136 MDIQGNLTENQASQPMHVQENCLKPSMGDQLPFGVPSSQGFLQDFHHIDHFPVNDGSSSNPIFLQHTPNFDPFDHNCKPFAESNGSAHVHLMHNFQYVGYSLNLPRTNQLDMVVANQRFLPFSALETKPLNFVAPDEISCISPPNFYKKVGLNKNLRESSSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVDQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDMWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPMDYRKKSVKNANAKTNNNGKAAAELLCGDQFCSNGQLVTKYDFNEVPDFCLDDNLFEEGCSIDSLLDDIQSASTMDDKDFDGKVQCAPTVEGKQSHHHHTEITMGIEVKKELDLVEMMSHHVNEK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium834g00006 431 FunFam Transcription factor MYB119 229 293 - -
Vium834g00006 431 SMART sant 227 275 IPR001005 -
Vium834g00006 431 SMART sant 175 224 IPR001005 -
Vium834g00006 431 Gene3D - 167 228 - -
Vium834g00006 431 CDD SANT 179 222 IPR001005 -
Vium834g00006 431 ProSiteProfiles Myb-like domain profile. 171 222 IPR001005 -
Vium834g00006 431 FunFam Transcriptional activator Myb isoform A 175 228 - -
Vium834g00006 431 SUPERFAMILY Homeodomain-like 173 269 IPR009057 -
Vium834g00006 431 Pfam Myb-like DNA-binding domain 230 270 IPR001005 -
Vium834g00006 431 Pfam Myb-like DNA-binding domain 176 222 IPR001005 -
Vium834g00006 431 PANTHER MYB PROTEIN-RELATED 158 315 - -
Vium834g00006 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 277 IPR017930 -
Vium834g00006 431 Gene3D - 229 281 - -
Vium834g00006 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 226 IPR017930 -
Vium834g00006 431 ProSiteProfiles Myb-like domain profile. 223 273 IPR001005 -
Vium834g00006 431 CDD SANT 231 273 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium834g00006 Vium-Chr834 48389 50032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium834g00006 102 375 MYB Transcription Factor Family AT4G18770 55.172 4.28e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium834g00006 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium834g00006 K09422 - gmx:100781456 733.791