Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8349g00002 ATGGAAACCGCATCCACACTTGCCTTCTTCCTCCGCCATGTCGCCGCCAAGTACCCCTCCCGCCGAGCGCTCTCCGTCGCTGCCAAATTTGACCTCACCCACTCCCGCCTCCAACAACTGGTGGAATCCGCCGCCCAACGGTTGCTCACCGCCGGAATCAAGCCCGGCGATGTCGTCGCCCTCACCTTCCCCAATACCGTCGAGTTTGTCATCATGTTTCTTGCCGTTATTCGAATTCGGGCCACAGCCGCGCCGTTAAACTCGGCTTACACAGCCGAAGAGTTCGAGTTTTATTTATCCGACTCCGAGTCCAAGCTTCTCCTAACATCTTCAGAAGGAAACAACGCAGCTCAAGCCGCAGCTTCAAAACTCAACATAGCTCACGCCACGGCTTCGGTAACCCAAGCCGAGAATAACGAACCCGAGCTGAGTCTCTCGCTGAGTCAATCCGACTCGGTTAACTCGGTCGATTCGGTTCAGTCAGTGATTAACGATCCTGATGACGTGGCGCTTTTCCTTCACACCTCCGGCACCACAAGCCGACCCAAGGGAGTGCCGCTCACTCAGCACAACTTGCTCTCTTCGGTACAGAACATTAAATCGGTGTACCGACTCACCGAGTCTGACTCGACGGTGATTGTGCTTCCGCTTTTTCACGTGCACGGTTTGATTGCGGGGTTGCTTAGTTCCCTCGCGGCCGGTGCGGCGGTGGCGCTGCCGGCGGCGGGAAGGTTCTCCGCCTCTGCGTTCTGGAAAGACATGGTGAAGTACAATGCCACGTGGTACACTGCGGTCCCCACCATACACCAGATTATACTGGACCGCCACGCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATACGAAGCTGCAGCGCGTCTCTGGCACCGGCTATTTTGGGTAAACTCGAGGAGGCTTTCGGTGCGCCGGTGTTGGAAGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCGAACCCTTTGCCGCAAGATGGGCCGCACAAGGCCGGGTCGGTTGGAAAGCCCGTGGGACAAGAAATGGTTATTTTGGACCAAACGGGTCGGGTTCAAGAGGCTGAAGTTAGCGGAGAAGTTTGCATTCGTGGCCCCAATGTTACGAAAGGGTATAAAAATAACGTGGATGCCAATACGGCGGCGTTTGAATTTGGTTGGTTCCATACCGGTGATGTTGGCTACTTGGATTCTGATGGTTATTTGCACCTCGTTGGTCGCATCAAGGAACTCATCAACCGTGGAGGCGAAAAGATATCACCAATTGAAGTTGATGCTGTTCTGCTTTCACATCCGGACATTGCACAAGCAGTTGCTTTCGGAGCGCCTGATGCCAAGTACGGTGAAGAGATATATTGTGCGGTTATCCCAAGAGAAGGATCAAACCTTGAACAGGCAGAGGTGTTAAGATATAGCAAGAACAATCTTGCATCCTTCAAAGTTCCCAAAAAGGTCTTCATTACTGATTCTTTGCCCAAGACTGCCACCGGAAAGATTTTGCGTCGTCTTGTCACAGAACACTTTGTCTCTCAAATTTGA 1560 0.5333 METASTLAFFLRHVAAKYPSRRALSVAAKFDLTHSRLQQLVESAAQRLLTAGIKPGDVVALTFPNTVEFVIMFLAVIRIRATAAPLNSAYTAEEFEFYLSDSESKLLLTSSEGNNAAQAAASKLNIAHATASVTQAENNEPELSLSLSQSDSVNSVDSVQSVINDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVQNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLAAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILGKLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQTGRVQEAEVSGEVCIRGPNVTKGYKNNVDANTAAFEFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGAPDAKYGEEIYCAVIPREGSNLEQAEVLRYSKNNLASFKVPKKVFITDSLPKTATGKILRRLVTEHFVSQI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8349g00002 519 Pfam AMP-binding enzyme C-terminal domain 430 505 IPR025110 -
Vium8349g00002 519 Gene3D - 6 414 IPR042099 -
Vium8349g00002 519 ProSitePatterns Putative AMP-binding domain signature. 172 183 IPR020845 -
Vium8349g00002 519 FunFam 4-coumarate--CoA ligase 2 417 518 - -
Vium8349g00002 519 Pfam AMP-binding enzyme 12 421 IPR000873 -
Vium8349g00002 519 CDD FACL_fum10p_like 19 513 IPR045310 GO:0016874
Vium8349g00002 519 Gene3D - 415 517 IPR045851 -
Vium8349g00002 519 PANTHER ACYL-COA SYNTHETASE 5 516 - -
Vium8349g00002 519 SUPERFAMILY Acetyl-CoA synthetase-like 6 517 - -
Vium8349g00002 519 FunFam Peroxisomal-coenzyme A synthetase 6 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8349g00002 Vium-Chr8349 21196 24714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8349g00002 5 519 Monolignol Biosynthesis Gene Families AT4G05160 29.190 4.48e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8349g00002 K22133 - gmx:100779306 875.159