Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8349g00001 ATGGAAACCGCATCCACACTTACCTTCTTCCTCCGCCATGTCGCCGCCAAGTACCCCTCCCGCCGAGCGCTCTCCGTCGCTGCCAAATTTGACCTCACCCACTCCCGCCTCCAACAACTGGTGGAATCCGCCGCCCAACGGTTGCTCACCGCCGGAATCAAGCCCGGCGATGTCGTCGCCCTCACCTTCCCCAATACCGTCGAGTTTGTCATCATGTTTCTTGCCGTTATTCGAATTCGGGCCACAGCCGCGCCGTTAAACTCGGCTTACACAGCCGAAGAGTTCGAGTTTTATTTATCCGACTCCGAGTCCAAGCTTCTCCTAACATCTTCAGAAGGAAACAACGCAGCTCAAGCCGCAGCTTCAAAACTCAACATAGCTCACGCCACGGCTTCGGTAACCCAAGCCGAGAATAACGAACCCGAGCTGAGTCTCTCGCTGAGTCAATCCGACTCGGTTAACTCGGTCGATTCGGTTCAGTCAGTGATTAACGATCCTGATGACGTGGCGCTTTTCCTTCACACCTCCGGCACCACAAGCCGACCCAAGGGAGTGCCGCTCACTCAGCACAACTTGCTCTCTTCGGTACAGAACATTAAATCGGTGTACCGACTCACAGAGTCTGACTCGACGGTGATTGTGCTTCCGCTTTTTCACGTGCACGGTTTGATTGCGGGGTTGCTTAGTTCCCTCGCGGCCGGTGCGGCGGTGGCGCTGCCGGCGGCGGGAAGGTTCTCCGCCTCTGCGTTCTGGAAAGACATGGTGAAGTACAATGCCACGTGGTACACTGCGGTCCCCACCATACACCAGATTATACTGGACCGCCACGCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATACGAAGCTGCAGCGCGTCTCTGGCACCGGCTATTTTGGGTAAACTCGAGGAGGCTTTCGGTGCGCCGGTGTTGGAAGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCGAACCCTTTGCCGCAAGATGGGCCGCACAAGGCCGGGTCGGTTGGAAAGCCCGTGGGACAAGAAATGGTTATTTTGGACCAAACGGGTCGGGTTCAAGAGGCTGAAGTTAGCGGAGAAGTTTGCATTCGTGGCCCCAATGTTACGAAAGGGTATAAAAATAACGTGGATGCCAATACGGCGGCGTTTGAATTTGGTTGGTTCCATACCGGTGATGTTGGCTACTTGGATTCTGATGGTTATTTGCACCTCGTTGGTCGCATCAAGGAACTCATCAACCGTGGAGGTATGTTAATATTTATTATTCAAAAATTTTCTGCAAATTTCTTTGGAAGGTATTGCGAATATTCTGAATTGAGGGAACCATGCTTTTTCAAAATTCGGTGCATTGACTGTTTTGAAGGAAAAGTTTGGGTTGAATACAGACTAAGCTTAACCATTGATTTTGGTGATTCATTGTCTTAG 1446 0.5249 METASTLTFFLRHVAAKYPSRRALSVAAKFDLTHSRLQQLVESAAQRLLTAGIKPGDVVALTFPNTVEFVIMFLAVIRIRATAAPLNSAYTAEEFEFYLSDSESKLLLTSSEGNNAAQAAASKLNIAHATASVTQAENNEPELSLSLSQSDSVNSVDSVQSVINDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVQNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLAAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILGKLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQTGRVQEAEVSGEVCIRGPNVTKGYKNNVDANTAAFEFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGMLIFIIQKFSANFFGRYCEYSELREPCFFKIRCIDCFEGKVWVEYRLSLTIDFGDSLS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8349g00001 481 PANTHER ACYL-COA SYNTHETASE 5 424 - -
Vium8349g00001 481 Gene3D - 6 414 IPR042099 -
Vium8349g00001 481 ProSitePatterns Putative AMP-binding domain signature. 172 183 IPR020845 -
Vium8349g00001 481 FunFam Peroxisomal-coenzyme A synthetase 6 414 - -
Vium8349g00001 481 SUPERFAMILY Acetyl-CoA synthetase-like 6 427 - -
Vium8349g00001 481 Pfam AMP-binding enzyme 12 421 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8349g00001 Vium-Chr8349 17090 19076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8349g00001 33 429 Monolignol Biosynthesis Gene Families AT1G65060 30.456 2.43e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8349g00001 K22133 - gmx:100779306 708.753