Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8340g00008 ATGGCAAGGCAGCAAGGTTCCAAGAAGAACAAGATGAAGGATGAAAGCAACAAAACAGTACCCTATTTCAAACTTTTTTCATTTGCAGACTCTTCAGATTATCTACTGATGTTTGTCGGGATAGTAAGCGCTGTTGGAAATGGAATAACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGATGCTTTTACACAACATGGCAACACTAAACATTTAGTTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCAGTAATAGGTGTAGCTTCCTTTATGACAGCTTTTCTACAGTTGGCTTGTTGGGTGTCCACCGGGGAGAGGCAGGCAGCGAGAATACGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATTAGCTTCTTCGACAAGGAAACCAACACTGCTGAGGTTGTTGGAAGGATATCAGGTGACACATTTCTTATTCAAGAAGCCATGGGAGACAAGGTAGGAAAATTCATACAGTGTGTGGCATGCTTTTTAGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTTCTATCTTGTGTTCCACCTCTTGTTTTCTCCGGTTCCATAATGAGCTTCGCGTTCGCAAAGTTGGCATCCAGCGGACAAGCAGCTTATTCTGAAGCAGCAATCGTAGTAGATCGCACAATTGGTTCAATTCGAACTGTTGCATCATTTACGGGCGAGAATCAAGCCATAATTCAATACAGTCAATCCTTAACCGATGCTTACAGGACTGCAGTGCAAGACGGAATGGCTGCTGGTTTAGGCCTTGGTTCAATCCGTTTATTTATCAACAGTAGCTTTGCATTGGCTGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGCTATACAGGAGGTGAAGTCATGAGTATATTTTACGCCCTATTTTTTGGCTCCATGTAAGCTAGTTTCTCTTGGCAGGAAAACTTGATATGCTTTTCAATGTTAATATTATTTTTCAGGTCGTTGGGGCAGGCTTTTACAAGTTTAACTGCATTCACTGCAGGACAGGCTGCCGCCTTTGAAATATTTGAAACAATAGATAGGCAGCCAAAAATTGATGCTTATGATACTGCAGGTCGACAGGTAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTTGTTATCCTTCAAGGCCAGATGAATTGATACTCAATGGATGTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGCAGTGGGAAATCAACAGTTATTAGTCTGATTGAGAGATTTTATGATCCACAAGCCGGAGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATCAAAGAAAATATTGCTTATGGTAAGGAAGGGGCAACAGATGAAGAAATCAGAGCTGCAATTGAACTTGCTAATGCAGCCAAATTCATAGATAGATTTCCGCATGGACATGATATGATTGTCGGTGAGCATGGTACACAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCACGGGCAATTCTAAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGTGCCCTCGATGCTGAGTCTGAGAGAGTGGTCCAAGAGACACTGGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACATCGCCTAAACACAATAAGGAATGCCGATACAATTGCTGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTGTCCATGCTGACCTCATTAAAGATCCTGATGGAGCTTACAGCCAACTCATTAGATTGCAAGAAATTAACAGGCACTCAGATGTTACAAATGACTCGGGAAAGCTAAAAAGCAGCAGTCGTCACTCATGCAGAATATCAAATGATATGCCTACTACACTTAATCTCTTGAAAACATCAGAAGGAGAACCTGAAGTTCTTACTCCAGCAGTACCGCATTCCTCTCCAAAAGTCTCGTTCCTTCAACTTGCTTATCTTAACAAGCCTGAAATTGCAGTGATAGTCCTCGGGACTCTAGCAGCCACAGTAACTGGGGCCATACTTCCTCTTGTGGGGTTTCTTACCTCCTGCATGATAAATACTTTCTCTGAGCCAGCAAATGAACTTCGTAAAGACTCAAAGTTTTGGGCTGCAGTATTTATAGCCCTTGGAGCCGCTGGCTTCATATTTCATCCACTAAGGTCCTACTTTTTTGCTGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATTATTCACATGGAAGTAGCCTGGTTTGACAAAGCTGAGCATTCAAGTGGAGTACTGGGAGCAAGGCTGTCAATTGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTAAGTTTGATGGTTCAAGATATTGCTACAGTAGTTATAGCCTTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCACTATTATTAGTAAACGGACAAGTGCAAATGGGGTCCATGCAAGGATCTGTCACTGATGCAAAGAAACTCTACGAAGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTAGCTTCTTTCTGTGCAGAAGAAAAGATGATGGAGTTATACCAGAAGAAATGTTCAGGGACCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACAAGTTTTGGGATATCACTCTTCTTGGTGTTCTCAGTTAATGCAGGCAGCTTTTATGCTGCAGCCCGACTTGTCGAGAGCGGCAAAACATCAATCTCAGATGTTTTCCGAGTATTTTTCACTCTCACATTGGCAGCAATAGCAATGACACAATCTGGCTTCATGGCCCCAGGTGCAAGTAAAGCAAAAAGTGCTGTTGCTTCTATATATGCTATTCTTGAGCAGAAATCAAATATAGACCCCAGTGATGAGTCTGGAATGATGTTGCAAGAAGTGAGAGGAGAGATTGAGTTCCACCACGTCACTTTCAAGTATCCAACCAGGCCTGATGTGCTTGTATTCAGAGATCTTTCCTTGACTATTAACGCAGGAGAGACAATTGCTCTAGCTGGAGAAAGTGGAAGTGGAAAGTCAACAGTAATATCATTATTGCAAAGATTTTATGACCCAGATTCAGGCCAGATAACACTAGATGGAACGGAAATAAAAAATCTACAACTCAAATGGTTTAGGAAGCAGATGGGCCTGGTGAGCCAGGAACCTATACTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCAGCAGCAGAACTGGCCAACGCGCACAAATTCATTAGCAGTTTGCAACAGGGTTACGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCGGGAGGACAGAAGCAACGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACTAGCGCACTAGATGCTGAGTCTGAAAGAGTTGTTCAGGATGCACTTGACCGAGTGAGGGTGGACAAAACAACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAACATGGAGTCATTGCAGAGCAAGGAAAGCATGACACTTTGATTAACAAGGGTGGTATCTATGCTTCGTTAGTAGGCTTGCACACAACTCATGCTTCATCTTAG 3777 0.4239 MARQQGSKKNKMKDESNKTVPYFKLFSFADSSDYLLMFVGIVSAVGNGITKASTNIVMGEAIDAFTQHGNTKHLVHEVSKVSLKFAVIGVASFMTAFLQLACWVSTGERQAARIRGLYLKAILRQDISFFDKETNTAEVVGRISGDTFLIQEAMGDKVGKFIQCVACFLGGIVIAFIKGWLLTLVLLSCVPPLVFSGSIMSFAFAKLASSGQAAYSEAAIVVDRTIGSIRTVASFTGENQAIIQYSQSLTDAYRTAVQDGMAAGLGLGSIRLFINSSFALAVWFGGKMVLEKGYTGGEVMSIFYALFFGSMXASFSWQENLICFSMLILFFRSLGQAFTSLTAFTAGQAAAFEIFETIDRQPKIDAYDTAGRQVDDISGDIELREVCFCYPSRPDELILNGCSISISSGTTAALVGKSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKEGATDEEIRAAIELANAAKFIDRFPHGHDMIVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGVHADLIKDPDGAYSQLIRLQEINRHSDVTNDSGKLKSSSRHSCRISNDMPTTLNLLKTSEGEPEVLTPAVPHSSPKVSFLQLAYLNKPEIAVIVLGTLAATVTGAILPLVGFLTSCMINTFSEPANELRKDSKFWAAVFIALGAAGFIFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVAWFDKAEHSSGVLGARLSIDVASIRTFVGDALSLMVQDIATVVIALAIAFEANWQLSLIILVLLPLLLVNGQVQMGSMQGSVTDAKKLYEEASQVANDAVGNIRTVASFCAEEKMMELYQKKCSGTIQTGIRQGLVSGTSFGISLFLVFSVNAGSFYAAARLVESGKTSISDVFRVFFTLTLAAIAMTQSGFMAPGASKAKSAVASIYAILEQKSNIDPSDESGMMLQEVRGEIEFHHVTFKYPTRPDVLVFRDLSLTINAGETIALAGESGSGKSTVISLLQRFYDPDSGQITLDGTEIKNLQLKWFRKQMGLVSQEPILFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDKTTIVVAHRLSTIKDADSIAVVEHGVIAEQGKHDTLINKGGIYASLVGLHTTHASS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8340g00008 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1251 IPR003439 GO:0005524
Vium8340g00008 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 619 IPR027417 -
Vium8340g00008 1258 Gene3D ABC transporter type 1, transmembrane domain 24 980 IPR036640 GO:0005524|GO:0016020
Vium8340g00008 1258 FunFam ABC transporter B family member 1 672 980 - -
Vium8340g00008 1258 PANTHER ABC TRANSPORTER B FAMILY 5 622 IPR039421 -
Vium8340g00008 1258 Gene3D ABC transporter type 1, transmembrane domain 981 1254 IPR036640 GO:0005524|GO:0016020
Vium8340g00008 1258 Pfam ABC transporter 399 548 IPR003439 GO:0005524
Vium8340g00008 1258 SUPERFAMILY ABC transporter transmembrane region 682 998 IPR036640 GO:0005524|GO:0016020
Vium8340g00008 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8340g00008 1258 FunFam ABC transporter B family member 1 371 620 - -
Vium8340g00008 1258 Pfam ABC transporter 1033 1182 IPR003439 GO:0005524
Vium8340g00008 1258 SUPERFAMILY ABC transporter transmembrane region 24 530 IPR036640 GO:0005524|GO:0016020
Vium8340g00008 1258 CDD ABC_MTABC3_MDL1_MDL2 381 619 - -
Vium8340g00008 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 682 997 - -
Vium8340g00008 1258 Gene3D - 1004 1253 IPR027417 -
Vium8340g00008 1258 Gene3D - 371 620 IPR027417 -
Vium8340g00008 1258 ProSitePatterns ABC transporters family signature. 1154 1168 IPR017871 GO:0005524|GO:0016887
Vium8340g00008 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 693 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8340g00008 1258 CDD ABC_MTABC3_MDL1_MDL2 1014 1249 - -
Vium8340g00008 1258 SMART AAA_5 408 594 IPR003593 GO:0016887
Vium8340g00008 1258 SMART AAA_5 1041 1234 IPR003593 GO:0016887
Vium8340g00008 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 617 IPR003439 GO:0005524
Vium8340g00008 1258 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Vium8340g00008 1258 FunFam ABC transporter B family member 1 1004 1253 - -
Vium8340g00008 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 354 - -
Vium8340g00008 1258 Pfam ABC transporter transmembrane region 693 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8340g00008 1258 Pfam ABC transporter transmembrane region 37 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium8340g00008 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1251 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8340g00008 Vium-Chr8340 22807 31739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8340g00008 7 639 Calmodulin-binding Proteins AT2G36910 36.050 1.44e-108 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8340g00008 K05658 - gmx:100798707 2016.51