Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8340g00001 TTGGCGTGTTTCATTTTGCAGGCAATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCTTCACTGCGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTAATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAACATTGTATCTTCAAGTTCTAAAAACAGCATTCGTTTGAATGGACTATTCAACATCATCTCATATGATTTGGTGCCAAAGCTGCAGAATTTGCTTACGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAAGCAAAGAGGACAACTGCTTCTCTTCCTGTAATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCAGCTTTATCAAGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAATTTGATGAAGGCTACAGTGCTGATTCGCAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCAAGAGTTGAAAATGGTAAAAGCCAAAATTAAGGATGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGTCAATGCTTGATTCGATACATGAGTTTCTTCGTAAGAAAAAAGTGGGTTGCATACGGATTGATGGAGGTACACCTGCTGCTTCCAGACAGCAATTGGTCACTGAGTTTCAGGAAAAAGATTCTACAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCGAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTGGAGGTCTCTGCTACTCTGCCAGAGAGTAGCCCTTCAAAGCAGAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACGCGGATAGCCCTTCAAAGCAGAAAACTCTGGACCAGTTTATTAGAAAACCTGAAAACTCGGATAGCCCTTCAAAGCAGAAAACGCTAGACCAGTTTGTTCGAAGATGTGATAAGATAGATGGGTTGGAACATGAGCCCAAACGTCCCCGAAACTGA 1515 0.4066 LACFILQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSSKNSIRLNGLFNIISYDLVPKLQNLLTTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFQELKMVKAKIKDAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQSMLDSIHEFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSTKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSATLPESSPSKQKTLDQFIRRPENADSPSKQKTLDQFIRKPENSDSPSKQKTLDQFVRRCDKIDGLEHEPKRPRN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8340g00001 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 428 IPR001650 -
Vium8340g00001 504 Gene3D - 233 488 IPR027417 -
Vium8340g00001 504 CDD SF2_C_SNF 272 396 - -
Vium8340g00001 504 Gene3D - 5 224 IPR038718 -
Vium8340g00001 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 210 IPR027417 -
Vium8340g00001 504 SMART helicmild6 302 385 IPR001650 -
Vium8340g00001 504 MobiDBLite consensus disorder prediction 445 484 - -
Vium8340g00001 504 FunFam Chromatin remodeling factor18 234 464 - -
Vium8340g00001 504 Pfam Helicase conserved C-terminal domain 281 385 IPR001650 -
Vium8340g00001 504 FunFam Chromatin remodeling factor18 3 223 - -
Vium8340g00001 504 Coils Coil 228 248 - -
Vium8340g00001 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 428 IPR027417 -
Vium8340g00001 504 MobiDBLite consensus disorder prediction 429 484 - -
Vium8340g00001 504 Pfam SNF2-related domain 18 255 IPR000330 GO:0005524|GO:0140658
Vium8340g00001 504 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 6 480 - -
Vium8340g00001 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 157 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8340g00001 Vium-Chr8340 1654 7731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8340g00001 244 405 RAD5 or RAD16-like Gene Family AT1G05120 31.138 8.79e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium8340g00001 SNF2_N 9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8340g00001 K14440 - gmx:100778246 842.802