Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8336g00001 ATGCTTAATTTTCAGAAGCTGTCTCTTCTATGGACGCTGCTGTTTCTGGTAGGGAATCCTGCGACCGGCAAGAACCACTGCGCCGATAAATGTGGCAAAGTTCGCATTGAATTTCCATTTTATCTCAGAAATAAAAACTTGAATCACACCACTGACTACCCGCCTGAGTTCGGTCTGTCATGCACCCAACAAAATAAGCCCATTCTGGAGCTGCCTACCCTTCCAATACAATTGTTTGTCAGAGAAATTGATTACAAATCTACGCTAATTGAAATATATGACCCCCAAAATTGCCTTCCCGATAAACTCTTGAAACTCGGCAATATATCCATCTCTCCATTCCGATTCCCCAAATATCTTGGTCGTCCTCCTCCTAAGTTGAACGTTTCCTTCTTCTGTTGCGACTCATTGTCGTGCCCTATTTCGCTACTACCATCCTACAAAGATGTTGTGGACCCACGATTAGTATCCTGCACGAAGCTGAAAGATGTTTCCGTCGAATGGTGGTCTTCGTATTATGAGGAGAAGTTTTTTATGGAATGGTCAAAACCTGATTGTGGATACTGTGAAGCACAGGGCCAAAACTGTAAATGGAGGAATGGTACTAACGGTGGAACTGAATGTAATGCTTGCCGAACAAAAAGGATTCCCACGTCAACTATCGTCCAAATTGCTGCAGGAGGAGTAGCTGGTTTGATACTTTTGCTGCTTCTTGTCAAGGCATTGTTTTATGCGTACGTCTATTATGAAAAGAGAGGAGAAGACCAAACTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCCACCAGGTTCACTTATGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGAGCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTAGTGAAATTCTTGTTGCTGTGAAGATACTCAAAGACACAGTGGGAAATGGAAATGATTTCATAAATGAAGTGAGAGCCATTGGGAAAATTCATCACGTTAACATTGTTCGCCTGCTTGGTTTCTGTGCAGATGAGTTCCACCGTGCTCTCGTCTACGATTTCTTTCCAAATGGGTCGTTGCAGAGATTCTTGGTTCAACAGAACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGGTCTTGGTGTTGGGAAAGGGATTGAGTATCTCCACCTTGGTTGTGATCATAGAATTCTTCACTTTGACATTAATCCTCACAATGTTTTGTTAGATGACCTTTTTGTCCCAAAAATCACTGATTTTGGCTTAGCCAAGCTGTGTCCCAAAAATCAGAGCACCGTGTCGATGACTGCCGCCAGGGGAACTTTGGGGTACATTGCCCCTGAGGTTTTCTCTCGGAACTTTGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGGATGTTGCTCTTAGAAATGGTTGGAGGAAGAAAGAATACAAATGTATCAGTTGAGGACAGTTTCCAAATTCTGTAA 1500 0.426 MLNFQKLSLLWTLLFLVGNPATGKNHCADKCGKVRIEFPFYLRNKNLNHTTDYPPEFGLSCTQQNKPILELPTLPIQLFVREIDYKSTLIEIYDPQNCLPDKLLKLGNISISPFRFPKYLGRPPPKLNVSFFCCDSLSCPISLLPSYKDVVDPRLVSCTKLKDVSVEWWSSYYEEKFFMEWSKPDCGYCEAQGQNCKWRNGTNGGTECNACRTKRIPTSTIVQIAAGGVAGLILLLLLVKALFYAYVYYEKRGEDQTRIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSSEILVAVKILKDTVGNGNDFINEVRAIGKIHHVNIVRLLGFCADEFHRALVYDFFPNGSLQRFLVQQNNKDVFLGWEKLQQIGLGVGKGIEYLHLGCDHRILHFDINPHNVLLDDLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSVEDSFQIL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8336g00001 499 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Vium8336g00001 499 PANTHER RUST RESISTANCE KINASE LR10-RELATED 255 490 IPR045874 GO:0004672
Vium8336g00001 499 Gene3D Transferase(Phosphotransferase) domain 1 359 498 - -
Vium8336g00001 499 Pfam Protein kinase domain 288 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8336g00001 499 ProSiteProfiles Protein kinase domain profile. 284 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8336g00001 499 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Vium8336g00001 499 Gene3D Phosphorylase Kinase; domain 1 258 358 - -
Vium8336g00001 499 SUPERFAMILY Protein kinase-like (PK-like) 264 487 IPR011009 -
Vium8336g00001 499 FunFam S-receptor-like serine/threonine-protein kinase 253 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8336g00001 Vium-Chr8336 2300 4197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8336g00001 182 485 Receptor kinase-like Gene Family AT1G66910 41.935 2.00e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium8336g00001 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8336g00001 - - vum:124846809 996.112