Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8324g00002 ATGGGTTCCTCTCGCTCACGTGCCTCTGCCACCGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGCTTTGTAGTGGCTGTAAATAGACTAGGTGGCCCTGATCGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGACTATGGGTATTTCAGAGCTAAGCATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCTCCACAAGAGGAAAAGTTGAGAAGAGAAGCATATCAGATATACTTCCAAATTTTAGCTCTATATCTGCTCTTCAACTAAAGGAACTGCTTCAAATGCAGAAAGAGGTGCAAAATCGCTTGGGTGATAAAACACAGGTTGCGAGAAGTATGAAGGAAAAAGTTGAAGCACAAGGAAGGTACATGGAGAGACTTGGACAAAGCAGTGAGATGAAAACAAGAACTGGAAAAGCATGCAAGGCTTTTGATTCTTCTACAACTGCACCTCTGCCTTCTCTTTCTGAGGAATCCGAATCACTGAAATCACAGAGTGAGAAAGAGCATGAATCGGTCAAAAAGCAAAGGATTTCAGAAGAGGGTGTTTTTCCATTAAGTTTTGAACATGCATCATCAACCCCACCAGAATTCTACAACCAAACATGGAATCTTCCTTGGAGCCAGCTTGCAGCAGCATGCCTATCAACTTTGGATCCCAGTTTCATATTTTGA 717 0.4268 MGSSRSRASATAKERLRWTQELHDRFVVAVNRLGGPDRATPKGILKGMKTMGISELSIYHVKSHLQKYRISKLIPESSTRGKVEKRSISDILPNFSSISALQLKELLQMQKEVQNRLGDKTQVARSMKEKVEAQGRYMERLGQSSEMKTRTGKACKAFDSSTTAPLPSLSEESESLKSQSEKEHESVKKQRISEEGVFPLSFEHASSTPPEFYNQTWNLPWSQLAAACLSTLDPSFIF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8324g00002 238 MobiDBLite consensus disorder prediction 144 174 - -
Vium8324g00002 238 MobiDBLite consensus disorder prediction 122 136 - -
Vium8324g00002 238 MobiDBLite consensus disorder prediction 118 191 - -
Vium8324g00002 238 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Vium8324g00002 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Vium8324g00002 238 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Vium8324g00002 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Vium8324g00002 238 Gene3D - 12 73 - -
Vium8324g00002 238 MobiDBLite consensus disorder prediction 175 191 - -
Vium8324g00002 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 184 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8324g00002 Vium-Chr8324 8152 11816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8324g00002 13 172 G2-like Transcription Factor Family AT3G24120 40.678 1.76e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium8324g00002 Myb_DNA-binding 2.4e-06 CL0123