Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8324g00001 ATGGACATGGCTTCCAGTCCGCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCCAGAAGAACCGGTGTTATTCGCGCTCTCACTCATGACGTTGATGAATTTTACGGACTCTGCGATCCAGATAAGGATAACTTGTGCCTCTATGGACACCCAAATGAAGCCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGAAGGGACTGGCTATCTCTGGTTGCTGTGCACAGTGACTCGTGGTTGGTTTCTGTGGCCTTCTACCTTGGGGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAATGATCTTCCATCCGTTTTTGAAGTTGTGACTGAAAGGAAACCAATTAAGGACAAGCCCACTGTGGATAGTGGAAGCAAGTCTCGGGGAAGTACCAAGAGATCCAATGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCTGCAGATGAGGGTTACGAGGAGGATGAAGATGAGCACAACGAAACACTCTGTGGAAGCTGTGGTGGAAACTACAACGCAGACGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGCGTTAAGATCACCCCTGCAAAGGCTGAGGGCATAAAGCAGTATAAATGTCCATCATGCAGCCTGAGGCGTGGCAGGCCCTAG 723 0.491 MDMASSPRTVEEIFKDYSARRTGVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTERKPIKDKPTVDSGSKSRGSTKRSNDGQVKSNPKFAADEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAEGIKQYKCPSCSLRRGRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8324g00001 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Vium8324g00001 240 SMART PHD_3 186 234 IPR001965 -
Vium8324g00001 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Vium8324g00001 240 MobiDBLite consensus disorder prediction 140 177 - -
Vium8324g00001 240 Pfam PHD-finger 187 234 IPR019787 -
Vium8324g00001 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Vium8324g00001 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Vium8324g00001 240 CDD PHD_AL_plant 186 236 IPR044104 -
Vium8324g00001 240 PANTHER CPG BINDING PROTEIN 6 239 IPR045104 GO:0006355|GO:0042393
Vium8324g00001 240 MobiDBLite consensus disorder prediction 148 165 - -
Vium8324g00001 240 FunFam PHD finger alfin-like protein 179 235 - -
Vium8324g00001 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8324g00001 Vium-Chr8324 3784 7165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8324g00001 4 239 Alfin-like Transcription Factor Family AT5G05610 75.527 1.97e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium8324g00001 Alfin 5e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8324g00001 K26274 - gmx:100782478 468.003