Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8318g00002 ATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACCTTCTCCAAGCGCAGAACAGGCTTGTTCAAAAAGGCTCAAGAACTCTCCATTCTCTGTGACTCCGAGGTTGCCGTCATAGTTTTTTCCAACACTGGCAAGCTCTTTGAGTTTTCCAGTTCAGGAATGATGCGAACACTTTCAAGATACAACAAATGTCTTGGTTCTACGGATGCTACTGCTGTAGCAGAAATTAAAACACAGAAGGAAGATTCTAAGATGGTGGACATTCTAAGAGAAGAAATTTCAAAGTTAGAATCAAAGCAATTACAGTTATTGGGTAAGGATCTGACAGGATTGGGAATAAAAGAATTGCAAAATATAGAGCAGCAACTCAGTGAGGGGTTATTGTCTGTAAAGGCAAAAAAGGAGGAATTACTTATGGAGCAGCTGGAGCAATCTAGAGTTCAGGAACAGCGGGTCATGTTGGAGAATGAAACTTTGCGCAGACAGATTGAGGAGCTTCGCTGTCTGTTTCCACAAACAGAAGCAATGGTTCCATTTCAGTATCAACGTCCTGAAAGAAAGAACACTTTTGTAAATACCGGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGAAATGAGAAAGGAAGTTCAGACACAGTATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGGCCCCAAGAAAGAAATCTTTTCAAATAA 732 0.4221 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDSEVAVIVFSNTGKLFEFSSSGMMRTLSRYNKCLGSTDATAVAEIKTQKEDSKMVDILREEISKLESKQLQLLGKDLTGLGIKELQNIEQQLSEGLLSVKAKKEELLMEQLEQSRVQEQRVMLENETLRRQIEELRCLFPQTEAMVPFQYQRPERKNTFVNTGARCLNLANNCGNEKGSSDTVFHLGLPAGVQEEGPQERNLFK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8318g00002 243 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vium8318g00002 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vium8318g00002 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vium8318g00002 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 Coils Coil 140 177 - -
Vium8318g00002 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium8318g00002 243 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Vium8318g00002 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium8318g00002 243 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8318g00002 Vium-Chr8318 36000 42761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8318g00002 1 233 MADS-box Gene Family AT5G13790 52.766 1.30e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium8318g00002 K-box 7.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8318g00002 - - gmx:547732 434.106