Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8314g00004 ATGGCCACTACAAATTCTCTCAGTGTGTCTTTTCCTGGCTTCAAACTAAAACTTTGTCTGACTCTGATTGCATGTGTAATTGGGGTTACTTCAGCTCAGTTATCTGCTAAATTCTATGAAAAAAGTTGCCCTGGTGCTCTTGCCACCATAAGGAAAGCAGTGAAACAAGCTGTGCACAATGAGTTTCGCATGGGGGCATCCTTGCTCCGACTCCATTTCCATGACTGCTTCGTTCAAGGATGTGATGCATCTGTGTTGTTAGACGACACGGATACTTTCACTGGGGAGAAGAATTCGTTTCCAAATGCTAACTCTCTTAGAGGTTTTGATGTGATTGATAACATAAAATCAGAGTTGGAGAACATGTGCCAAGATGTTGTCTCTTGTGCAGACATCTTAGCCGTTGCTGCGAGAGACGCTGTTTTTGAACTTGGTGGACCAAGATGGGAAGTACCGTTAGGCAGAAGAGATTCAACCACAGCAAGTTTAGCCGAATCTAATTCAGACTTACCAGCTCCTTTTTTCGATCTCGATGGCCTCACCAGTGCTTTCGCCAAGAAAAATTTCACTGTCCAAGAACTAGTTACTTTATCAGGTGGTCACTCAATAGGACTGGTGAGGTGTCGTTTCTTCAGAAAGAGGATTTATAACGAGAGCAACATCGACCAGACATTTGCAGAGGAAAAGCAACAAGAGTGTCCCTTCGAAGGTGGTGACGACAACTTAAGTGCTTTCGATTCGACCACTCCGTTCAAATTTGACAATGCGTTCTACAAGAACTTGTTGCAGCAAAAGGGTCTGGTCCACTCCGATCAACAGCTCTTCAACGGCGTCAATGGAACTAATAGCCCCACAAAGGATCAAGTAGTTAATTATGCGAGAAACATGGCAAAATTCAAGAAGGATTTCGCAGCTGCAATGTTGAAGATGAGCATGATGACCCCACTTACTGGTTCAGACGGTGAGATCAGGAAAAAGTGCAGCCGAGTGAATCCTCCTTCAACCTGA 1008 0.4425 MATTNSLSVSFPGFKLKLCLTLIACVIGVTSAQLSAKFYEKSCPGALATIRKAVKQAVHNEFRMGASLLRLHFHDCFVQGCDASVLLDDTDTFTGEKNSFPNANSLRGFDVIDNIKSELENMCQDVVSCADILAVAARDAVFELGGPRWEVPLGRRDSTTASLAESNSDLPAPFFDLDGLTSAFAKKNFTVQELVTLSGGHSIGLVRCRFFRKRIYNESNIDQTFAEEKQQECPFEGGDDNLSAFDSTTPFKFDNAFYKNLLQQKGLVHSDQQLFNGVNGTNSPTKDQVVNYARNMAKFKKDFAAAMLKMSMMTPLTGSDGEIRKKCSRVNPPST 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8314g00004 335 Gene3D - 37 328 - -
Vium8314g00004 335 PANTHER PEROXIDASE 72-RELATED 28 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 CDD secretory_peroxidase 33 330 IPR033905 GO:0004601|GO:0042744
Vium8314g00004 335 SUPERFAMILY Heme-dependent peroxidases 33 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 ProSitePatterns Peroxidases active site signature. 65 76 IPR019794 GO:0004601
Vium8314g00004 335 FunFam Peroxidase 37 174 - -
Vium8314g00004 335 Gene3D Peroxidase, domain 2 171 310 - -
Vium8314g00004 335 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 107 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 FunFam Peroxidase 171 310 - -
Vium8314g00004 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Vium8314g00004 335 Pfam Peroxidase 51 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 PRINTS Haem peroxidase superfamily signature 65 79 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8314g00004 335 ProSiteProfiles Plant heme peroxidase family profile. 33 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8314g00004 Vium-Chr8314 11127 13155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8314g00004 29 331 Peroxidase AT5G05340 55.738 9.89e-123 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8314g00004 K00430 - gmx:100802244 505.753