Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8313g00001 ATGGATTCGGATCAGGGAAAATTATTCATCGGTGGGATATCGTGGGACACTACGGAGGACAAGCTCAAGGAGCATTTCGGTAACTACGGCGACGTTTTGAGCACTTCTGTTATGCGAGAGAAGAACACTGGCAAGCCCAGGGGCTTTGGTTTCGTCGTCTTCGCGGATCCCACCATTCTCGATAGGGTTCTCGAGGATAAACATGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCTTTCTCAAGAGAGGATCAACAAATTTCTGTCACCTCGAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGAAATGGAGGAAACATCAGAACTAAAAAGATATTTGTTGGAGGGCTGCCTCCTACCCTGACTGAAGAAAAATTTCGCCAGTACTTTGAGTCTTATGGACATGTAACCGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGAGGATTTGGTTTTATTTCATTTGATACTGAGGAGGCTGTTGATAGGGTATTGCATAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTTCTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGTAACCAAAATGCATATGATGGGCGAATGGATTCTAGTAGGTATATGCAGCCTCAAAGCGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTACAGTGCTCCTGGGTATGGATATGGTCCGGCTAATAATGGTATTGGGTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCAGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCTAATGTTCCTAATGCTGCTTATGCTGGTGGTCCTCCAGGGGGCCCAAGGAGTTCATGGCCTGCTCAGGCACCCTCTGGTTATGGATCTATGGGCTATGGGAATACTCCTCCATGGGGTGCTCCAAGTGGTGGTGCTGGCTCTGGTGGAAGTGGTCCTGGTTCAGCAGCTGCAGGTCAGTCCCCTGGTGGAGCTGCCGGATATGGGAACCAAGGTTATGGATATGGGGGATACGGTGGATACGGTGGAAGTGATAGTTCTTATGCGAATTCAAGTGCATATGGCACTGTTGGTGGACGAACAGGGAGTGCTCCAAACAATAGTGCTAGTGGTCCTGGTGGGGGTGAACTAACAAGTAGTGGTGGCAGTGGTAGCTATATGAGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCAGAACAAACTGGAAATTATGGAACTCCACAGGGAAATGGTGGCCAGGTTGGTTACGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAACAGTAA 1422 0.4866 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPTILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGSGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTPPWGAPSGGAGSGGSGPGSAAAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYANSSAYGTVGGRTGSAPNNSASGPGGGELTSSGGSGSYMSGGYGDANGNSGYGNAAWRSEQTGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8313g00001 473 CDD RRM2_Hrp1p 113 190 - -
Vium8313g00001 473 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vium8313g00001 473 MobiDBLite consensus disorder prediction 84 107 - -
Vium8313g00001 473 MobiDBLite consensus disorder prediction 382 425 - -
Vium8313g00001 473 FunFam heterogeneous nuclear ribonucleoprotein 1 107 230 - -
Vium8313g00001 473 Gene3D - 4 88 IPR012677 -
Vium8313g00001 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 473 - -
Vium8313g00001 473 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vium8313g00001 473 Gene3D - 108 231 IPR012677 -
Vium8313g00001 473 MobiDBLite consensus disorder prediction 382 473 - -
Vium8313g00001 473 MobiDBLite consensus disorder prediction 322 356 - -
Vium8313g00001 473 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Vium8313g00001 473 MobiDBLite consensus disorder prediction 433 452 - -
Vium8313g00001 473 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Vium8313g00001 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Vium8313g00001 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Vium8313g00001 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vium8313g00001 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vium8313g00001 473 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vium8313g00001 473 SMART rrm1_1 113 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8313g00001 Vium-Chr8313 8335 11325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8313g00001 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.378 9.39e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8313g00001 K14411 - gmx:100786882 609.372