Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8311g00001 ATGTGGCCCGGGGCGTCGAGGTCATTCAACCACAACCTTTCACCCCACCACGACATCTTCGTGGTGGCGCCCGCGTCGTCGTTCCATCACCACCACCACAGTGACGCTGTTTTGTCCGATCCAAACAACAACAGTTCCAACGCAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGCCTCACTCCCGAGAGCGAGGGCATAATGGGAAACATCAATAACCACCGCAACAGAATTCAACTATGGCAACCACAGGAATCACCACAGCACCAACACGCCGACGGCGTCTTGGCGGGTAACCACCGTAGCAGAATTCAGTTATGGCAAGAACACGACGAGTCTCCCCCGCCGCAGCAGCAGCAACAACAACACCCGAACGCGCACGTGCACGAGCGGGAGGGGAGTGGGAGCGGTGCGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCCACGCACGTGAAGAGCACTTGGGTGCCAGCCGCGCGCCGGAGGGAGCGCCAGCTCATGGCGGCGACGGCAGCGGTTGGGTCCAGTGGGTCCACTTCCGCCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCGAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCAGCAGAGTTCAAGTGTGTTCGTGTCACTGCAGTGGATGATGGAGATGATGAGTATGCATATCAAGCTGTGGTGAAAATAGGTGGTCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAAGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATCTCGGTGGTGGTGGAAGTGATGGTGGTGGTAGAAATGGGGTTTCTTCTTCATCTCCAATGGTGAATCCTTCTGATTTCTATGCAGCTTCTGCTGGAGTGTTACTGGGAAGTTCATCAAACTATGGTAATGCAATAAATTAA 1077 0.5432 MWPGASRSFNHNLSPHHDIFVVAPASSFHHHHHSDAVLSDPNNNSSNATALGVNVFPLLTATPCLTPESEGIMGNINNHRNRIQLWQPQESPQHQHADGVLAGNHRSRIQLWQEHDESPPPQQQQQQHPNAHVHEREGSGSGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATAAVGSSGSTSATKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEYPNLSELHLGGGGSDGGGRNGVSSSSPMVNPSDFYAASAGVLLGSSSNYGNAIN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8311g00001 358 MobiDBLite consensus disorder prediction 195 244 - -
Vium8311g00001 358 NCBIfam putative zinc finger domain, LRP1 type 145 187 IPR006510 -
Vium8311g00001 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 26 342 IPR007818 GO:0003700|GO:0006355
Vium8311g00001 358 MobiDBLite consensus disorder prediction 115 150 - -
Vium8311g00001 358 MobiDBLite consensus disorder prediction 307 330 - -
Vium8311g00001 358 Pfam Domain of unknown function (DUF702) 143 300 - -
Vium8311g00001 358 MobiDBLite consensus disorder prediction 197 244 - -
Vium8311g00001 358 NCBIfam LRP1 C-terminal domain 252 299 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8311g00001 Vium-Chr8311 8267 11934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8311g00001 18 335 C2H2 Transcription Factor Family AT5G12330 49.697 2.03e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium8311g00001 DUF702 5.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8311g00001 - - gmx:100816514 451.055