Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8295g00003 ATGGACGAGGTGGTTGTGTTGGATACATGGGGCAGCATGTTTGGGATGAGGGCTTGGATTGCATTGGAAGAAAAGGGTGTTAAGTATGAACGGAAGGAAGAGGATCTGAGCAAGAAGAGCCCTTTGCTTCTGCAGATGAACCCTATTCACAAGAAAATTCCAGTTCTCATTCATAATGGAAAACCCATTTCTGAATCTGCAATAATAGTGCAGTACATCGATGAGGTCTGGAATCACAATCCTCCATTCATGCCCTCTCATCCTTATGAGAGAGCTCAAGCCAGATTCTGGGTCGATTACATTGATGCAAAGATATATCCTACTTGGAATAAAATGTGGCTTTCTGAAGGAGAAGAACATGAGGCAGGAAAAAAAGAGTTGATTTCTATCTTTAAGCAGCTGGAAGAGACAATGGGTGACAAACCTTTTTATGGAAATGAGAAGTTTGGCTTTGTTGATATTGCTCTTATCCCTTTCTACAGTTGGTTTTATACTTTTGAGACATATGGAAACTTTGAAATGGAAGCAGAGTGTCCTAAACTTGTGGCTTGGGCTAAAAGATGCATGCAGAGAGAGACTGTGTCCACCATTCTTCCTAATGAGAAGGAAGTTTACAATGCAGTAGTGGAAATGAAGAAGAATATAGAAACTTAA 654 0.4037 MDEVVVLDTWGSMFGMRAWIALEEKGVKYERKEEDLSKKSPLLLQMNPIHKKIPVLIHNGKPISESAIIVQYIDEVWNHNPPFMPSHPYERAQARFWVDYIDAKIYPTWNKMWLSEGEEHEAGKKELISIFKQLEETMGDKPFYGNEKFGFVDIALIPFYSWFYTFETYGNFEMEAECPKLVAWAKRCMQRETVSTILPNEKEVYNAVVEMKKNIET 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8295g00003 217 Pfam Glutathione S-transferase, C-terminal domain 121 187 - -
Vium8295g00003 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Vium8295g00003 217 SFLD Main (cytGST) 1 215 - -
Vium8295g00003 217 CDD GST_N_Tau 4 77 - -
Vium8295g00003 217 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Vium8295g00003 217 Pfam Glutathione S-transferase, N-terminal domain 6 75 IPR004045 -
Vium8295g00003 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Vium8295g00003 217 Gene3D Glutaredoxin 1 86 - -
Vium8295g00003 217 FunFam Glutathione S-transferase U20 87 217 - -
Vium8295g00003 217 CDD GST_C_Tau 88 211 IPR045074 GO:0004364|GO:0006749
Vium8295g00003 217 SUPERFAMILY GST C-terminal domain-like 75 211 IPR036282 -
Vium8295g00003 217 FunFam Tau class glutathione S-transferase 1 86 - -
Vium8295g00003 217 Gene3D - 87 217 - -
Vium8295g00003 217 SFLD Main.3: Omega- and Tau-like 1 215 IPR045073 -
Vium8295g00003 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 205 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8295g00003 Vium-Chr8295 28979 31048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8295g00003 2 213 Glutathione S-transferase Gene Family AT1G78380 60.849 5.78e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8295g00003 K00799 - gmx:100500477 375.17