Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8295g00002 ATGGCAGACGAGGTTGTTCTGTTGGATACATGGGCCAGCATGTTTGGGATGAGGGTTAGGATTGCATTGGCAGAAAAGGGTATTAAGTACGAATGGAAGGAAGAGGATCTGAGAAACAAGAGCGCTTTGCTTCTGCAGATGAACCCTGTTCACAAGAAGATTCCAGTTCTCATCCATAATGGGAAACCCATCTGCGAATCTGCAATAATAGTGCAGTACATCGATGAGGTCTGGAACCACAACCCTAAAATCATGCCCTCTGACCCATACGAAAGAGCTCAGGCCAGATTCTGGATGGATTACATTGATAAAAAGGTGTATGATACATGGAGGAAACTGTGGCTTTCTACTGGAGAGGAGCGTGAGACATTGAAGAAGGAGTTTATCTCTATCTTTAAGCAACTGGAAGAGACACTTGGTAACAAACCTTTTTTTGGGGGTGACATGTTTGGCTTTGTTGATGTTGGTCTGATCCCTTTTTATAGTTGGTTTTATTCGTATGAGACGTATGGTAACTTCAAAATGGAAGAAGAATGTCCTAAACTCATAGCTTGGGCCAAGAGATGCATGGAGAGAGAGACGGTGTCCAAAACACTTCCTGATGAAAAGAAGATTTATGCTTTTATCGACGGAATAAAGAAAGTCCTTGATTCAAAATAG 660 0.4212 MADEVVLLDTWASMFGMRVRIALAEKGIKYEWKEEDLRNKSALLLQMNPVHKKIPVLIHNGKPICESAIIVQYIDEVWNHNPKIMPSDPYERAQARFWMDYIDKKVYDTWRKLWLSTGEERETLKKEFISIFKQLEETLGNKPFFGGDMFGFVDVGLIPFYSWFYSYETYGNFKMEEECPKLIAWAKRCMERETVSKTLPDEKKIYAFIDGIKKVLDSK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8295g00002 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 207 IPR045073 -
Vium8295g00002 219 SUPERFAMILY GST C-terminal domain-like 76 212 IPR036282 -
Vium8295g00002 219 CDD GST_C_Tau 89 209 IPR045074 GO:0004364|GO:0006749
Vium8295g00002 219 Gene3D - 88 218 - -
Vium8295g00002 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vium8295g00002 219 CDD GST_N_Tau 5 78 - -
Vium8295g00002 219 Gene3D Glutaredoxin 1 87 - -
Vium8295g00002 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
Vium8295g00002 219 FunFam Glutathione S-transferase U20 88 219 - -
Vium8295g00002 219 SFLD Main (cytGST) 2 216 - -
Vium8295g00002 219 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Vium8295g00002 219 Pfam Glutathione S-transferase, C-terminal domain 121 188 - -
Vium8295g00002 219 FunFam Tau class glutathione S-transferase 1 87 - -
Vium8295g00002 219 Pfam Glutathione S-transferase, N-terminal domain 7 76 IPR004045 -
Vium8295g00002 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8295g00002 Vium-Chr8295 18101 19126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8295g00002 1 214 Glutathione S-transferase Gene Family AT1G78380 64.486 7.61e-107 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8295g00002 K00799 - gmx:106796199 380.563