Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8293g00010 ATGGCACTCTCACTGTGTTCCGGTGTTCGCGTTCCTTATTGCTCTCCTTCGTGTTTTTGGAAACCAAATGGTAAGAATTGCGAAGCGCCTACTAAGTTGCCATGTGCAGTTCACAGTAAGAAAAATCCATTGGTTGGAATGGGTATTGGGTTGGTAACAGCGTGGGTGATGGGTTTAACGGCATTGGACGCGGACGCCACAAGAATCGAATACTACGCTACCGTTGGAGAGCCTTTGTGTGAGTACAAGTATGTGAAGTCTGGCCTCGGTTACTGTGATATTGTTGAGGGCTTCGGTGTAGAAGCTCCACTCGGTGAGCTTATCAATGTTCACTATACTGCGAGATTTGCCGATGGAATAGTGTTTGATAGCAGCTACAAACGTGGTAGATCTCTCACCATGCGCATTGGTGTTGGCAAGGTAATCAAGGGACTGGATCAGGGAATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTGCAGATTCCTCCACAGTTAGCATATGGCCCTGAACCTGCGGGGTGCTTCTCAGGTGACTGCAACATACCCGCCAATGCCACTCTTCTGTATGATGTTAATTTTGTTGAGCTTTATTCGGGGAACAGATCAAAGTGA 633 0.4771 MALSLCSGVRVPYCSPSCFWKPNGKNCEAPTKLPCAVHSKKNPLVGMGIGLVTAWVMGLTALDADATRIEYYATVGEPLCEYKYVKSGLGYCDIVEGFGVEAPLGELINVHYTARFADGIVFDSSYKRGRSLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPQLAYGPEPAGCFSGDCNIPANATLLYDVNFVELYSGNRSK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8293g00010 210 SUPERFAMILY FKBP-like 81 202 - -
Vium8293g00010 210 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 102 199 IPR001179 GO:0003755
Vium8293g00010 210 Gene3D - 78 202 IPR046357 GO:0003755
Vium8293g00010 210 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 36 208 IPR044183 GO:0009507
Vium8293g00010 210 FunFam Peptidylprolyl isomerase 77 203 - -
Vium8293g00010 210 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 105 204 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8293g00010 Vium-Chr8293 80817 82640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8293g00010 81 205 Calmodulin-binding Proteins AT3G25230 39.370 6.31e-15 70.9