Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8292g00005 ATGGAAACCCGTGCTGGGGCAAAGAGAAAGAGAAAGGAAGCTGTTGTGGTGGTGGAAAAACAACACCCCAAGATGCATAGGGTTGTATTGGGTGAACTTCCCAATCTACCAAACCTTATTAATCAAAATCTGGCCAAACAGAAAGTTTCATGTTGGAAAAATCCCAACATCAAGAAACTACCTTCTCCTCAGATAGACCAACATTATGTATCTGACATCGATGAATATCTTCGTGAAATGGAGAAGAAGAAAAGACCAATAGTTAACTATATGGACAAAGTTCAGTTGGTACTTACAGCAAACATGAGACAAATATTGGTGGATTGGCTAGTAGATGTTGCTGTGGAGTATAAGCTTCTCTCTGAAACTCTTCATCTTTGTGTGTCATTAATAGATAGGTTTCTATCAGTTAGTCCTGTGACAAAGTCCAAGCTTCAGTTAGTAGGTGTTTCTTCCATGCTTCTTGCCTCGAAGTATGAGGAAACTAAACCACCCAGTGTGCGCAAATTTTGCAGCATCACCGATAACACATTTGAAAAGAAAGAGGTTGTAAAGATGGAAGCTGAAATACTTGAGTCTCTAAACTTTGAAATTGGCAATCCTACTGCAATCACTTTTCTAAAGAGATTTTTGAGTGTTGCTTCTGCGAACCAAAAAACACCAAATTTGAAGATTGAGTTCCTGAGCTTCTATCTTGCTGAGCTAAGTTTGTTGGATTATAGTTGTATAAGATTCTTGCCTTCCATTATAGCTGCATCTGCTTTATTTCTTGCCAGGTTTATTACCTCTCCCAAAGTGCATCCTTGGAGTTCTTCCCTGGGTGAATGGTCCGGTTACAAACCATTTGAGTTGAAAGTCTGTGTTGTCACTTTGCATGACTTATATTTTTCAAGAGAGGCAGCATCATTCCGATCTGTTAGGGATAAATATAAACAGTGCAAGTTCAAGTGTGTGGCAAACCTGCCATCTCCTCCACATGTACCAAGTCATTACTTTGAAGACTGA 1005 0.394 METRAGAKRKRKEAVVVVEKQHPKMHRVVLGELPNLPNLINQNLAKQKVSCWKNPNIKKLPSPQIDQHYVSDIDEYLREMEKKKRPIVNYMDKVQLVLTANMRQILVDWLVDVAVEYKLLSETLHLCVSLIDRFLSVSPVTKSKLQLVGVSSMLLASKYEETKPPSVRKFCSITDNTFEKKEVVKMEAEILESLNFEIGNPTAITFLKRFLSVASANQKTPNLKIEFLSFYLAELSLLDYSCIRFLPSIIAASALFLARFITSPKVHPWSSSLGEWSGYKPFELKVCVVTLHDLYFSREAASFRSVRDKYKQCKFKCVANLPSPPHVPSHYFED 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8292g00005 334 SUPERFAMILY Cyclin-like 62 198 IPR036915 -
Vium8292g00005 334 ProSitePatterns Cyclins signature. 103 134 IPR006671 -
Vium8292g00005 334 SMART Cyclin_C_2 201 324 IPR004367 -
Vium8292g00005 334 Gene3D - 72 320 - -
Vium8292g00005 334 SUPERFAMILY Cyclin-like 201 326 IPR036915 -
Vium8292g00005 334 Gene3D - 86 199 - -
Vium8292g00005 334 PANTHER CYCLINS 52 317 IPR039361 -
Vium8292g00005 334 FunFam G2/mitotic-specific cyclin 86 198 - -
Vium8292g00005 334 Pfam Cyclin, N-terminal domain 73 198 IPR006671 -
Vium8292g00005 334 SMART cyclin_7 205 293 IPR013763 -
Vium8292g00005 334 SMART cyclin_7 108 192 IPR013763 -
Vium8292g00005 334 FunFam Cyclin superfamily protein, putative 199 270 - -
Vium8292g00005 334 Pfam Cyclin, C-terminal domain 201 323 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8292g00005 Vium-Chr8292 27946 30141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8292g00005 3 334 Core Cell Cycle Gene Families AT5G43080 53.216 1.43e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8292g00005 K06627 - gmx:100786875 466.848