Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8285g00004 ATGGGTTGCGTGCTCGGGACGCCGGCGCGTGCCGGAGTTCAGCGCCGTCGCCGGAGGGAGCAGCGGGAAGTTGCTACCGGAGAAGTTAATAATGCCGTTAGGGTTCGAGATAAGGAAAGGCACCTGCATACCGGCGATTTTCCGGGGACTCTTCCGGCGCTGGAGCGCCGGAAACCTATACTCGACCCGTGCGCTGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGTCGAGCCAACACTTTCGAGAAGCTTGCTAAGATTGGACAAGGGACCTATAGTAACGTGTATAAGGCTAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCGGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTTTATATTTAGTGTTTGAGTATATGGAGCATGATCTCGCAGGGCTTGCGGCTGGACAAGGGGTCAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAACCTGCTTATAGACAATGAAGGAATCCTTAGAATTGCAGATTTTGGACTGGCAACTTTTTTTGATCCCAAGATAAAACAGGCAATGACAAGTAGAGTGGTGACCCTTTGGTATCGTCCTCCCGAGCTTCTTCTTGGAGCTACATTATATGGTGTGGGTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTTCTGGAAAGCCAATAATGCCTGGCCGAACAGAGGTTGAACAGCTCCACAAAATATTTAAGTTGTGA 933 0.5027 MGCVLGTPARAGVQRRRRREQREVATGEVNNAVRVRDKERHLHTGDFPGTLPALERRKPILDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILRIADFGLATFFDPKIKQAMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLSGKPIMPGRTEVEQLHKIFKL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8285g00004 310 ProSiteProfiles Protein kinase domain profile. 94 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8285g00004 310 Gene3D Transferase(Phosphotransferase) domain 1 177 310 - -
Vium8285g00004 310 PANTHER CELL DIVISION PROTEIN KINASE 92 308 - -
Vium8285g00004 310 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Vium8285g00004 310 SUPERFAMILY Protein kinase-like (PK-like) 88 310 IPR011009 -
Vium8285g00004 310 FunFam Mitogen-activated protein kinase 175 310 - -
Vium8285g00004 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vium8285g00004 310 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Vium8285g00004 310 SMART serkin_6 94 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8285g00004 310 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Vium8285g00004 310 Pfam Protein kinase domain 94 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8285g00004 310 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8285g00004 Vium-Chr8285 38054 42467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8285g00004 86 310 Core Cell Cycle Gene Families AT5G10270 56.250 4.24e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium8285g00004 Pkinase 1.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8285g00004 K08819 - gmx:100807756 575.474