Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8285g00003 ATGGGTTGCGTGCTCGGGACGCCGGCGCGTGCCGGAGTTCAGCGCCGTCGCCGGAGGGAGCAGCGGGAAGTTGCTACCGGAGAAGTTAATAATGCCGTTAGGGTTCGAGATAAGGAAAGGCACCTGCATACCGGCGATTTTCCGGGGACTCTTCCGGCGCTGGAGCGCCGGAAACCTATACTCGACCCGTGCGCTGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGTCGAGCCAACACTTTCGAGAAGCTTGCTAAGATTGGACAAGGGACCTATAGTAACGTGTATAAGGCTAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCGGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTTTATATTTAGTGTTTGAGTATATGGAGCATGATCTCGCAGGGCTTGCGGCTGGACAAGGGGTCAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAACCTGCTTATAGACAATGAAGGAATCCTTAGAATTGCAGATTTTGGACTGGCAACTTTTTTTGATCCCAAGATAAAACAGGCAATGACAAGTAGAGTGGTGACCCTTTGGTATCGTCCTCCCGAGCTTCTTCTTGGAGCTACATTATATGGTGTGGGTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTTCTGGAAAGCCAATAATGCCTGGCCGAACAGAGAGTCGCTTTTGA 912 0.5077 MGCVLGTPARAGVQRRRRREQREVATGEVNNAVRVRDKERHLHTGDFPGTLPALERRKPILDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILRIADFGLATFFDPKIKQAMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLSGKPIMPGRTESRF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8285g00003 303 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Vium8285g00003 303 SUPERFAMILY Protein kinase-like (PK-like) 88 300 IPR011009 -
Vium8285g00003 303 ProSiteProfiles Protein kinase domain profile. 94 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8285g00003 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vium8285g00003 303 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Vium8285g00003 303 FunFam Mitogen-activated protein kinase 175 301 - -
Vium8285g00003 303 Pfam Protein kinase domain 94 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8285g00003 303 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Vium8285g00003 303 SMART serkin_6 94 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8285g00003 303 PANTHER CELL DIVISION PROTEIN KINASE 92 300 - -
Vium8285g00003 303 MobiDBLite consensus disorder prediction 1 25 - -
Vium8285g00003 303 Gene3D Transferase(Phosphotransferase) domain 1 177 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8285g00003 Vium-Chr8285 38047 40808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8285g00003 86 301 Core Cell Cycle Gene Families AT5G10270 55.411 2.74e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium8285g00003 Pkinase 8.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8285g00003 K08819 - gmx:100807756 556.214