Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8281g00004 ATGACTCCTCTCAACCCCTTCATCCTCCTCCTCCTCTTCTGCTTCCTTTCTCTCCCATCCTCTTCCTTATCCGCCTGTCCCCTCAACTTCACCGTCCTCGGCACCACCAAGCCTTCCTCCTTTGACTCCTCCCGCTGCCAGGTCATCAGCCAGGCCCTCCGCCTCGTCCAGTCCGACTACCTTCGCCGCAGCGGCTTTTTCCTCGCGCCCTCCAACGCCTCCGACTCCTGCTGGCAAAGCTTCCAGTCCTACGTTAACCTCTTCGACCCCACCTACAACATTCGCTCGTCCTGTGGCTACCAAACCTCCTGGATCTCCCAGGGCTGCGTCAACGTCACCACCAGACAGGAGTTCGAAGCTCTGGTTCCTCAATCCGCTCTTCAGTCCGTAGGAAAAAACTGCAATCAATCGCTCGAGAATAATTCTCCCTGCGCCCTCTGCACCTCCTCCCTCTCCTCTATCCCGCACTTGGGACAGTCCGTCGGCAACCTCACCAGCTGCACTGACTACTCTTCTATCTACGCCGCCGCCTTCGCCAACTACCTCGGCCCCTCCGACCCCGGCACCGCCAAGTGCTTGTTCTCCCTCGAATTTCCCTCCGCCGGTTCCTCCGCCTCCAAAAGAAGAAAGCTTCTTTTTGGGCTTGTTTCTGTTGTCTGTGTCGTGGTTTTCTGCTTGCTGGCTTTCGGCTTTTGGGCTTATCGCAAGTTTGAAAAGAAGGTGGCTCGGGATATGGATGTTCGTGTTGTGGAAACCGGTTTCATTTCTGGGTTGGATTCCATGGACCAGAGCACCACCTTGATCAGGTTCACTTTCGATGATATTAAGAAGGCAACTAAGAATTTCTCCCGGGATAACATAGTTGGAAGAGGGGGTTACGGGAATGTGTACAAAGGGTTGCTTCCTGATGGGAGTGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCGGCTGCTGGTGACGCGAGCTTTACTCATGAGGTTGAGGTTATTGCTAGCGTGAGGCATGTTAACCTTGTTGCCCTGAGAGGTTATTGTTCTGTCACGACTCGTTTAGAAGGTTACCAGAGGATTATTGTTTGTGATATGGTGAAAAACGGGAGTCTCCACGACCATTTGTTTGGTTCCAATGGGGTGAAACTGAGTTGGCCAATTCGTCAGCAGATTGCTCTAGGCACCGCTAGAGGGCTGGCTTATTTGCATTATGGGGCTCAACCTGCAATTATTCATAGGGATATTAAAGCAAGTAATATACTTTTGGATGATAAGTTTGAAGCCAAGGTTGCTGATTTTGGACTGGCGAAGTTTAACCCTGAGGGGATGACGCATATGAGCACTAGGGTGGCTGGAACCATGGGGTATGTTGCTCCGGAATATGCTTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGGGTTGTGCTTCTTGAGCTTTTGAGTGGTAGGAAGGCGCTTCAGATGAACAATGATGGTCAACCATCTGCTTTAACCGATTGGGCTTGGTCATTAGTTAGAACCGGAAAGGCTTTGGATGTAATTGAAGATGGCATGCCACAACCTGGTTCACCACAAGTTCTCGAGAAGTATGTGTTAATTGCTGTGCTTTGCTCTCATCCACAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACCGATGAATCAGTGCCCTCAATACCCGAACGCCCAATCCCTTTTGTCGCTGGGAGGCTCGATATTGACAGATCTGTGAGCAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACGGGTTATCAAACATATACTCTAGAAAGTGATAGCCAATTAACTAATTCTAGGGAAGAAAGAAGCTCCAGCTCCAGGGTTTTATGTACAGATTGA 1878 0.5 MTPLNPFILLLLFCFLSLPSSSLSACPLNFTVLGTTKPSSFDSSRCQVISQALRLVQSDYLRRSGFFLAPSNASDSCWQSFQSYVNLFDPTYNIRSSCGYQTSWISQGCVNVTTRQEFEALVPQSALQSVGKNCNQSLENNSPCALCTSSLSSIPHLGQSVGNLTSCTDYSSIYAAAFANYLGPSDPGTAKCLFSLEFPSAGSSASKRRKLLFGLVSVVCVVVFCLLAFGFWAYRKFEKKVARDMDVRVVETGFISGLDSMDQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFGSNGVKLSWPIRQQIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVIEDGMPQPGSPQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPFVAGRLDIDRSVSSSGSGQLSSPTGYQTYTLESDSQLTNSREERSSSSRVLCTD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8281g00004 625 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8281g00004 625 MobiDBLite consensus disorder prediction 582 625 - -
Vium8281g00004 625 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Vium8281g00004 625 Pfam SPARK 22 160 IPR043891 -
Vium8281g00004 625 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Vium8281g00004 625 Gene3D Transferase(Phosphotransferase) domain 1 363 564 - -
Vium8281g00004 625 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 243 361 - -
Vium8281g00004 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vium8281g00004 625 CDD STKc_IRAK 288 557 - -
Vium8281g00004 625 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 363 564 - -
Vium8281g00004 625 ProSiteProfiles Protein kinase domain profile. 282 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8281g00004 625 SUPERFAMILY Protein kinase-like (PK-like) 264 573 IPR011009 -
Vium8281g00004 625 Pfam Protein kinase domain 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8281g00004 625 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 124 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8281g00004 Vium-Chr8281 65154 67930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8281g00004 8 611 Receptor kinase-like Gene Family AT2G48010 62.397 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium8281g00004 Pkinase 7.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8281g00004 - - gmx:100800760 1021.92