Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8281g00002 ATGAAGGAAAAGGTGGATTCCCCCGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGGTTCTAGGTGGCATGCATTTCTTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCAGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTCTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCGGTTCTTTATGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATCATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACGGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCCGAATACTTGCTACATGGCATAGTGGACGAGAAAACAGACATATTTGCATTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATATCATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGAACATCTGCGAGTCAACCCACTAA 1149 0.4369 MKEKVDSPVTVLEDYFRSSDSESSSSKEPAVDSESQDLSKHGSRWHAFLHLFRSGSKKHTNTLHPLSALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQNICESTH 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8281g00002 382 MobiDBLite consensus disorder prediction 1 38 - -
Vium8281g00002 382 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
Vium8281g00002 382 Gene3D Phosphorylase Kinase; domain 1 90 189 - -
Vium8281g00002 382 Gene3D Transferase(Phosphotransferase) domain 1 192 382 - -
Vium8281g00002 382 SUPERFAMILY Protein kinase-like (PK-like) 96 375 IPR011009 -
Vium8281g00002 382 PANTHER OS08G0249100 PROTEIN 6 375 IPR046958 -
Vium8281g00002 382 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Vium8281g00002 382 Pfam Protein kinase domain 116 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8281g00002 382 ProSiteProfiles Protein kinase domain profile. 115 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8281g00002 382 MobiDBLite consensus disorder prediction 14 32 - -
Vium8281g00002 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vium8281g00002 382 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 379 - -
Vium8281g00002 382 SMART serkin_6 115 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8281g00002 Vium-Chr8281 33012 36982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8281g00002 102 375 Trihelix Transcription Factor Family AT1G68690 41.754 1.39e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium8281g00002 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8281g00002 - - gmx:100780587 694.115