Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8277g00001 ATGAAGAAGTGCGAACTGTGTAAGCTTCCGGCCAGGATTTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCAAAGGTTCACGGCGCAAACTTCTTGGTCGCCAGACACTCGCGAACCCTACTCTGCCGTACGTGCCACTCTCCCACGCCGTGGAAGGCCGCCGGAGCCAGACTCTCTAACGCCGCCTCCATCTGCCACCGCTGCGCCGCCTCCGCCGCAGAAGAACCGGACGAGACCGAATCCGGCAATGACGAGGAACCAAGCACGGAGGATGACGATGTCTCCGGCGAGGAAGACGGCGAGAACCAGGTCGTGCCGTGGTCCTCCACACCGCCTCCGCCGGCGAGCTCCTCCAGCAGCGAGTGGTCGTCGTTCAGCGGGTGCAAAAACGACGACGACGAAGGTGCTTCTGTTTCCGTATGTGAACCGGAAACGACAACATCCTCGTTGAAACGACAACGCGAGAACGACGACGACGGTGTATCCGGCCGTGATCCGCAGGGGTTTGGAAGGGTTGCGCATCTCAACGGAGGTGGCGTATGA 555 0.6126 MKKCELCKLPARIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCHSPTPWKAAGARLSNAASICHRCAASAAEEPDETESGNDEEPSTEDDDVSGEEDGENQVVPWSSTPPPPASSSSSEWSSFSGCKNDDDEGASVSVCEPETTTSSLKRQRENDDDGVSGRDPQGFGRVAHLNGGGV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8277g00001 184 CDD Bbox1_BBX-like 3 45 - -
Vium8277g00001 184 MobiDBLite consensus disorder prediction 76 184 - -
Vium8277g00001 184 MobiDBLite consensus disorder prediction 152 168 - -
Vium8277g00001 184 Pfam B-box zinc finger 2 40 IPR000315 GO:0008270
Vium8277g00001 184 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vium8277g00001 184 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vium8277g00001 184 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 144 - -
Vium8277g00001 184 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8277g00001 Vium-Chr8277 8494 10079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8277g00001 2 118 C2C2-CO-like Transcription Factor Family AT5G54470 47.015 2.17e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium8277g00001 zf-B_box 9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8277g00001 - - vun:114168631 330.102