Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8276g00004 ATGGGAAAAGCATTCGACGTGGGAGCCGTTCCGTTCAACTCCGACGGCTGGGGACCACCGGAAACAGCGGCCGCCGGCGGTAGCAGCAACCTTCCTCTCAACGTTCCCTTTGCCCCCTTCTCCCGTTCTGACAAATTGGGCCGCATCGCCGACTGGACCCGCAATTTCAACAACCCGACCCGCTCCAAGAACCCCGCAGATTCCGTCTTCGACTTCACCAACGATGACTCCTTCCCGGCCTCCGCTGACGACGACGCCTCATTCCGCCTCGTCGATGGCAAGCCTCCACCGCGCCCCAAATTCGGCCCTAAGTGGCGTTTCCAGCAGCAGCGTCAGCTTCCGCAACGCCGCGACGAGGAGGTCGAAGCCCGAAAACGCGAACAGGAGAAGGAACGCGCACGTCGCGATAGGCTATACCACATGAACCGCTCAAACCCTAACGCGCCGCGTCGTGAAGCCGCTGTTTTCAAATCCTCTGTGGATATCCAACCGGAATGGAACATGCACGACCAGATCCCCTTCTCCACGTTCTCTAAACTCTCCTTCACCGTTCCCGAGCCTGAAGACCTTCTCCTCTGTGGTGCTCTCGAATACTACGATCGTACCTACGATCGCATCACACCCAAAAACGAACGCCGCCTGGAACGTTTCAAGAATCGGAACTTCTTCAAGGTCACCACTACTGACGACCCTGTTATACGCAGACTCGCGAACGAGGACAAAGCCACTGTTTTTGCCACCGACACTATTCTCTCCACTCTCATGTGTGCCCCAAGGTCTGTATATTCGTGGGATATTGTCGTTCAGCGCGTTGGGAACAAGCTTTTCTTTGATAAGCGTGATGGGTCACAGCTTGATTTGCTTTCCGTTCACGAGACCTCTCAGGAGCCACTGCCTGAGGCTAAGGATGATATTAACTCTGCTCATTCGTTGAGCGTTGAGGCTGCCTATATTAACCAGAATTTCTCGCAGCAGGTTCTGATCAGGGATGGGAACAAGGTTACTTTTGATGAGGCTAATCCTTTTGCTAACGAGGGTGAGGAGGTTGCTTCTGTGGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCGAGGTGTGAGGTGCACAGTGTGGTTGATGTGAATAAGCAGCGGTCGTTCCTTACTTTGAATGCTTTAAATGAGTTTGATCCTAAGTATTCGGGTGTGGATTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCCGTGTTGGCCACTGAGCTTAAAAACAATGCGAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTTTTGGCTAGCGCGGATATGATGAAGTTGGGGTATGTGTCTAGGATTCATCCCCGTGATCATTTTAATCATGTGATTTTGGCTGTGGTAGGGTACAAGCCCAGGGACTTTGCAGCACAGATCAATTTGAATACTGCTAATATGTGGGGTATTGTGAAGTCTATAGTTGATTTGTGCATGAAATTGAACGAGGGAAAATATGTCCTTGTGAAGGATCCGTCCAAACCTCAAGTTAGGATTTATGAGGTTCCGGCTGATGCGTTTGAAAATGACTATGTGGAGGAGCCACTTCCGGAGGATGAACAAGCTCAGCCTCCGGCGGAGGGTACTGAGGAGGCAGAATCTGGTACCACCAATGATGTGGAAGATAAGCAGATAGACGTTCAAGCTTGA 1692 0.5136 MGKAFDVGAVPFNSDGWGPPETAAAGGSSNLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRSKNPADSVFDFTNDDSFPASADDDASFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEEVEARKREQEKERARRDRLYHMNRSNPNAPRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQAQPPAEGTEEAESGTTNDVEDKQIDVQA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8276g00004 563 MobiDBLite consensus disorder prediction 54 136 - -
Vium8276g00004 563 MobiDBLite consensus disorder prediction 111 136 - -
Vium8276g00004 563 MobiDBLite consensus disorder prediction 1 32 - -
Vium8276g00004 563 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 527 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vium8276g00004 563 Coils Coil 116 136 - -
Vium8276g00004 563 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 7 515 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vium8276g00004 563 MobiDBLite consensus disorder prediction 54 75 - -
Vium8276g00004 563 PIRSF Transl_init_eIF3d 1 545 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vium8276g00004 563 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 538 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vium8276g00004 563 MobiDBLite consensus disorder prediction 524 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8276g00004 Vium-Chr8276 24660 27777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8276g00004 1 560 Eukaryotic Initiation Factors Gene Family AT4G20980 77.645 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8276g00004 K03251 - gmx:100799613 1055.05