LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8276g00002	ATGGAGAACAACCCTAGTCCTTCCCGAGTTGATAGAAAATTCATTGAGAGGGACAGAAGAAACCAAATGAAGGCTCTCTTCCGCAGACTCAACTCTCTTGTGCCGCATCAAACATCAAAGGCGGTTTCACTGCCGGATCAGGTAGAAGAAGCAACAAACTACATAAAGAAATTACAGATGAATATGGAGAAAATGGAGAAGAAGAAGAACAAGCTACTAGGAATAGAAAGACCAAATGTGAGCACGAATGGAGGAGGAGAGAGAGTAGGGTTTAAATCTCCACGGATTGAGATCCGACAAATGGGTTCAGCCGTAGAGGTTGTTCTGATAACTGGGTTGGATTCTCAGTTCATGTTCAGTGAAACCATTCGTGTTCTTCATGAAGAAGGATTAGATGTTGTTAACGCTAGTTATAATGTTATCCAAGATGCAGTTTTCCATTCAATACACTGTCATCAGGACGAGAAATTTGCCAACGGAGCTGCTAGGATATCTGAGAGGCTAAAGAAATCCATCTACGAGTCTAGCTACTGTGCTTTTTAA	543	0.418	MENNPSPSRVDRKFIERDRRNQMKALFRRLNSLVPHQTSKAVSLPDQVEEATNYIKKLQMNMEKMEKKKNKLLGIERPNVSTNGGGERVGFKSPRIEIRQMGSAVEVVLITGLDSQFMFSETIRVLHEEGLDVVNASYNVIQDAVFHSIHCHQDEKFANGAARISERLKKSIYESSYCAF	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8276g00002	180	Gene3D	-	1	80	IPR036638	GO:0046983
	Vium8276g00002	180	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	7	58	IPR011598	GO:0046983
	Vium8276g00002	180	Coils	Coil	48	75	-	-
	Vium8276g00002	180	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	8	73	IPR036638	GO:0046983
	Vium8276g00002	180	Pfam	Helix-loop-helix DNA-binding domain	9	59	IPR011598	GO:0046983
	Vium8276g00002	180	PANTHER	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	9	173	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8276g00002	Vium-Chr8276	21563	22678	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8276g00002	3	172	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G20970	41.989	1.77e-41	136

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Vium8276g00002		HLH	7.9e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8276g00002	-		-	gmx:100784418	271.166