Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8274g00011 ATGTCAGATTCACAGTCCAATTCTGAGATCTTCACCATTCGGATTGTCTCCATCGACTATTACATGGCGCCGCCAATCCCCGACGCCGATATCTGTTATAGTAGCTTCCACGGTGGAGAGGTGAACGAGGTGCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACGTGCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCGGATATACCACTTCAACTGGACCAAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCTACAAGACAGCATGTACATGGATGCAGTATTGTACAAGCAAGGAAATTCTATGGCTATCATTCACTTGAGGAGTTATTTGTAAAGATATACTTATATTATCCTCAAGATGTTTCTCGTGCAGCTAGTCTTCTCTTGGCTGGAGCTGTTCTTGATAAAAGTTTACAGCCATATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCAATTGCACCTATCAAAGATGAAGTTCCGCCATCCGATACCTGACACTTTCAAGAAATTAAATATTGATGGCCAGCATACAAAGGCAGATCTACTTTCTCATGCATGTCTAGAGTCAAAATATTGGATGTCTTCCACAATTCCATCTGAGTGGATATGGTTACCCACAAGCAAATCCAGTGCTTCTTTAAATGATAAGGCTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTGAATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATACCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAACAGAAACGGACCGGGATTCATGAGGCTGCTATGCCTTCTGGTCCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCTGTTGGTCTGGACTTTGAGAAAAAATTTATTGAGTTATGCAGTGAAGTTGGAACCTTATTTTGTACTCCTTCTGGGAAGGAATTGAGTGAAACAGACATAATAGGGTCAGCATCACCACCTGCTACATTATGCAAAAATGCCAAATTGCAAACAGAAGGGACTGATGCCAATCTTGAAATGTTGACTATGGATGAAATTCAGTCAACTGAAATGATTGGATCGGTGGACATAAAGGCTGTTGATAAGGAAGCGAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGTAGAGGATATAAACTCTGATGATGATCTTGCTTATGAAACAATCTTGACTCCCTTGCTGCCTGCTGCAACAATTGATAAAGTGTTGGAGGAAGCTAATATTGCCTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAACTGATGATATGCTTGAGTTGGAGTTACCAAAGGAAAAGCCTTTTCTTTCCTTTGGTTACAATTGTCCTATTGAAAATCGGAAATTACCCCAAGTTGATGGTTCTAATGATGAGTTCTCAGGTCAATGTGGTAGTTTGGCTGGAACCTCTTCTCCAGCAGATATAAACAGTGAATTCAAAAGCGCCTCTGAGTACCATGTTCTGCATAGTACAGGCACGAGCACAGTTAGTAAAGATAGAAGGAATAAGAAATGGGGGTCTTTGCCTTTATCTGCAATTGATCAGGTTAATAACGATGGAGAACGAGCTACTTTACTTGTGACTCATCCAGTTGAAAGTGATATTGGAGATTCTGCTTGCTCAGATCACCTAACTATAAATGAGGTTAGCAGTAGTGCTTGTATTTTAAGGAACAAGGACAAAAATGCTTCAGATTCGAAAGAAGTACACAGATCAGTTACCTGTTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGGTGAATACGACTCGGGAACTACTAAAAAGCTTCTTTTAGACAGGCTTGAGGAACCAGATGTATGCTTTGGGCAAAAGCAACTGGATTTAAAAACAATGGAAGTTGATGTAGAAGAAATGGAAAACCAAAAGATTTGTGAACTTGAAGTTAGCAATCATGCTAATATATTGCATGGGAAACTGCTCCTTTCAACTTGCAGTGATGGTCCTTTACACGGTAGTAGGCCAAAAGATGAATGTTTTGGTCAACATGAAATGGAAGGTATAGAAGCGAGTACAGTATTGAGGAACTGTACAAAAGGAGGTTCTGCTTTAATGCATGATGGACCAGGGCTCCATAAGCCTGAAAAATTATGTTTATTTGATTCCATAGATCAATCTGTGGCTTGCAGGGATGAAAACCTTAAGGGTGGCTTGACTTTTACAAAGCATGTAGCTTCTGATGCATATATTAAAAGTCCCTTTTTAGACACTCAGTTCAGAACAGCTGCTGTTCATGAAGTCAGAGCTCCCGAGAGCAGTCCACAACCTGATTCTTCTGCTTCAACTAGTGTGCAGAGCTCGTTCATTATTGATAGAGTGTCTGGTAAATATAATTTTGTGGATCAAAATTCTCACCAAAGCTTATCATTTGTGGAACATGATCAGATGATGTTTTGTGAGAATTCTGTGAAGAAAAGTGATGCAAATGATGTGCAAGTATTGCTTAGTGAAAAGCTGGATAATCACAAGGTGGATGGAAATTTGTTACATGAGATCATTGACTCTGAACCCACTGACCTAAAGGGTAATCACCCGAAATTAACTGAAGTAACCACAAGCAAGAACCCTCTGGTTGATAAGAATCTTGAAAGTACAACAACCTGTAATACCTATTTACATTTGGATGAAGATAGCTCTGATGAAATGACAGGTTTTAGCTTTATCCTCTTTGATCCAATTTCCTCTATTTTTCCCTTATTTGCATTTGTTTCTATTTTTTCTGTATACATTGAATTGGTTTTGGGTCTCATGGCATACCTTGTTAAAGAATTGAGCCTATCTCATCCTAGGTTATGTATTAATATTCAGGCAGCCTTTTCAATATCTTTCTGTGGGGCTTAA 3045 0.3987 MSDSQSNSEIFTIRIVSIDYYMAPPIPDADICYSSFHGGEVNEVPVIRVYGSTPAGQKTCLHVHRALPYLYVPCSDIPLQLDQGDAFTYKVAASLEKALKLKGSAGSTRQHVHGCSIVQARKFYGYHSLEELFVKIYLYYPQDVSRAASLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGQLHLSKMKFRHPIPDTFKKLNIDGQHTKADLLSHACLESKYWMSSTIPSEWIWLPTSKSSASLNDKAHCPKRQSICELEGDTSVNEILNQQFKMYSSLSQTCSDTNMVQSLVPIWEEQQKRTGIHEAAMPSGPGKPLPEDVMKLFSVGLDFEKKFIELCSEVGTLFCTPSGKELSETDIIGSASPPATLCKNAKLQTEGTDANLEMLTMDEIQSTEMIGSVDIKAVDKEAKNLLKWLATSQAVEDINSDDDLAYETILTPLLPAATIDKVLEEANIAYESESQKECQDILDSTDDMLELELPKEKPFLSFGYNCPIENRKLPQVDGSNDEFSGQCGSLAGTSSPADINSEFKSASEYHVLHSTGTSTVSKDRRNKKWGSLPLSAIDQVNNDGERATLLVTHPVESDIGDSACSDHLTINEVSSSACILRNKDKNASDSKEVHRSVTCSLRDLMRRKRSYRVEQGEYDSGTTKKLLLDRLEEPDVCFGQKQLDLKTMEVDVEEMENQKICELEVSNHANILHGKLLLSTCSDGPLHGSRPKDECFGQHEMEGIEASTVLRNCTKGGSALMHDGPGLHKPEKLCLFDSIDQSVACRDENLKGGLTFTKHVASDAYIKSPFLDTQFRTAAVHEVRAPESSPQPDSSASTSVQSSFIIDRVSGKYNFVDQNSHQSLSFVEHDQMMFCENSVKKSDANDVQVLLSEKLDNHKVDGNLLHEIIDSEPTDLKGNHPKLTEVTTSKNPLVDKNLESTTTCNTYLHLDEDSSDEMTGFSFILFDPISSIFPLFAFVSIFSVYIELVLGLMAYLVKELSLSHPRLCINIQAAFSISFCGA 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8274g00011 1014 Gene3D DNA Polymerase, chain B, domain 1 30 195 - -
Vium8274g00011 1014 Coils Coil 670 690 - -
Vium8274g00011 1014 SUPERFAMILY Ribonuclease H-like 27 274 IPR012337 -
Vium8274g00011 1014 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 820 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vium8274g00011 1014 FunFam DNA polymerase 30 195 - -
Vium8274g00011 1014 MobiDBLite consensus disorder prediction 813 832 - -
Vium8274g00011 1014 Pfam DNA polymerase family B, exonuclease domain 55 207 IPR006133 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8274g00011 39 225 Core DNA Replication Machinery Family AT5G63960 28.125 4.29e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8274g00011 K02350 - gmx:100777934 1429.46